CI01000034_04318823_04319740 (FOXD3, FOXD1)


Basic Information

Item Value
gene id CI01000034_04318823_04319740
gene name FOXD3, FOXD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4318544 ~ 4320127 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04318823_04319740.mRNA
ATGGTTCCTTCAGAGGACCGTCTGCGGGCAGAACCTGGTCGAGTTGCCCTGTTTTCATTGGAGTGGAGCTTCTTCCTGAGAACTTCGTCATGACATCATCGTCATCTGATTCCCGAACAGCTGCAGGAATCCAGTTGCGTTGGAGTGGACGATGGACATTGTTGCTGTGTATGCAGCTCTGCAGACCTCCTGCGCTCGAATGTTGAGGATTCCTGTGTGGCCGAATTAAATCTCGCGTTGATATAGCGTGCTCGTCTCTTTATAATCCATCTTCCAGAGTGTTCTGAGGAACCAGGAACAGACCTTTCCGAGTGTGAGAGAATTTAAGTCTCGCGCGTGGCCATCTGCTTGTTTGGAACCCGTCTCGTGGACTCCAACTTGTGGATTATGACCCTGGACACTGATTTAATGGATGACCTTTTTGTTGACGTGGTTGGAGAAGGTGGCAAGGAGTCTGGAGACGAACATCTTTCGACCTCGTCTCTTTCCGACCAGGTGCATAACAAGGGGGATAAGGACCACGTCCCCTCTTCCATATGTCCCTCAAGTTCGAGCAAAAGCCCTTCGGTGAAACCGCCCTATTCCTACATCGCTTTGATCACCATGGCGATCCTCCAGAGCCCAAAGAAGCGTCTCACCCTCAGCGAGATATGCGACTTCATCAGCCACCGGTTCGCGTACTACCGAGAGAAGTTCCCAGCCTGGCAGAACTCCATCCGACACAATCTCTCCCTAAACGACTGCTTCGTGAAAATGCCACGCGAGCCGGGTAATCCCGGGAAAGGGAATTACTGGACTCTGGATCCCAATTCATCGGATATGTTTGAGAACGGAAGTTTCCTGAGGAGGAGGAAGCGATTTAAACGGCAGCACTTTAAATTTGGGGTGTTCAAAGATCAAGCGCTGCAGCCGAGTGCTTTCCCGAACCTCAGCTACGGCGCGTACGGGCTCAGCGCGTCCTGCGCGCACTTACCGGGGCTGGATATCTACCCGTTTGGCTTCCATCAACCCATCGGTGTTCCACCTGTTGGCGGCATTTTACCGGCTCTGTCTACGCTTTTCTCGAGGAACTCTGTCGCAGCCAAGTCTTTCCCACAGTCCCAAACAGTGGCCATCGAGCCTGTCACCCCGGGCCTCGCCTGCGCAATGGCCCCGACCTCTCCATACGCGTCCTCAGCACTGTTCAATCCAGTGGGCTTCCCTCGGGTCCTCAATTTTCAGTACGAATACCAGAAGCTACAAAATGTGCACAGCCACGTGGATTTGTCCACTAAACACAGACACCTGGCTAGTGTCAATGACTAACATCGCATATTTGGACACGAAACTTATTTTTTTCTCAGGAATTATTTCATTTATCCCGAGGTATAAGAGTGTGTAGAGCATCGCGTCGAATGTTTGCGAACATTTTAACGAACTTTTGAGTTTATTTTCTGTCGGGAAAGAATTCAGTGAGTGTATTTCTGTTACATGCTGAAAATGCTTCTTTGATGCATGTTATTTTATTGGAATGATTAAATATCGAATGATTCAACTAGGCTATTTAAATGACGAATTTCCTTTTCGCATTTTGACGGAAATAAA

Function

symbol description
foxd3 Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within several processes, including iridophore differentiation; negative regulation of macromolecule metabolic process; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural crest; neural keel; and neural plate. Human ortholog(s) of this gene implicated in vitiligo. Orthologous to human FOXD3 (forkhead box D3).
foxd1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; head; immature eye; and neural crest. Orthologous to human FOXD1 (forkhead box D1).

GO:

id name namespace
GO:0090184 positive regulation of kidney development biological_process

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04318823_04319740.mRNA True 1584 mRNA 0.49 1 4318544 4320127

Neighbor

gene id symbol gene type direction distance location
CI01000034_04239062_04242494 NA coding downstream 75904 4238771 ~ 4242640 (-)
CI01000034_04216451_04218876 NA coding downstream 96663 4216212 ~ 4221881 (-)
CI01000034_04174469_04189564 SEZ6L2 coding downstream 128980 4174416 ~ 4189564 (-)
CI01000034_04165535_04172272 KCTD13 coding downstream 146272 4165373 ~ 4172272 (-)
CI01000034_04154954_04164874 NA coding downstream 153670 4154651 ~ 4164874 (-)
CI01000034_04350907_04363668 NA coding upstream 30479 4350606 ~ 4363683 (-)
CI01000034_04370706_04374491 SPC24 coding upstream 50499 4370626 ~ 4375413 (-)
CI01000034_04376314_04386958 NA coding upstream 56187 4376314 ~ 4386958 (-)
CI01000034_04392399_04400096 LDLR, LDLRA coding upstream 72073 4392200 ~ 4400096 (-)
CI01000034_04431146_04446849 SMARCA4A, SMARCA4 coding upstream 111019 4431146 ~ 4447168 (-)
G172422 NA non-coding downstream 26798 4291531 ~ 4291746 (-)
G172421 NA non-coding downstream 27690 4290653 ~ 4290854 (-)
G172420 NA non-coding downstream 28449 4289847 ~ 4290095 (-)
G172419 NA non-coding downstream 40389 4277853 ~ 4278155 (-)
G172415 NA non-coding downstream 47049 4265083 ~ 4271495 (-)
G172475 NA non-coding upstream 14022 4334149 ~ 4334773 (-)
G172480 NA non-coding upstream 36186 4356313 ~ 4356554 (-)
G172456 NA non-coding upstream 85508 4405635 ~ 4409237 (-)
G172488 NA non-coding upstream 148807 4468934 ~ 4469211 (-)
G172504 NA non-coding upstream 178877 4499004 ~ 4499747 (-)
G172151 NA other downstream 920731 3391144 ~ 3451802 (-)
G172016 NA other downstream 1081929 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1807023 2510061 ~ 2511521 (-)
G172593 NA other upstream 672833 4992960 ~ 4994943 (-)
G172800 NA other upstream 1468905 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1477443 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026355 zgc:162612 coding NC_007114.7 CM002887.2 26108033 ~ 26109322 (-)