CI01000034_04376314_04386958


Basic Information

Item Value
gene id CI01000034_04376314_04386958
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4376314 ~ 4386958 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04376314_04386958.mRNA
ATGTCGGACCTCAAGATTAATAAGAAGTTCGCAGAAAAATATGAGAAATATCGTCAGAAGGAAGAACTGCAGAGACTGAAGGACCGTTACGGAGACCAGGATGAGGAGAATTCATCTGATTCCTCAGACTCTGACTCTGATGAGAGTGAAGTGGAGCTGGACCCAAAGTTGGACAGGGATTTTTACAGAACACTCTCGCTTCTGAAGAAGAAAGATCCAAAGATCTATCAGAATGATGCCAAGTTCTACACAGAGGACATATCTGGATCAGGCAGCGACGAGCAACCGTCCACTTCGAAAAAGGCAGAGAAACCCATGTTCTTGAAGGACTATGAGAGGAAGGTCATCCTGGAGAGAGGAGGGAAATATGATGATGATGAGGATGAGAGTGCTGATGAAGAAGTCTCCAAACAGATGCAGGAGAGAGCTTCATCTCCCACCTATATTCAAGAACAGAAGGAGCTGCAGGAAAGTTTGCGAAAGTTTGTGCAAGACAGTGATGAAGAGGACAGTGATGGTGACGGACAGCTGCTGATGCGGAGGATCAAAACACAAGAGGAGAAGGACAAAGAGGAAGCTGACTACGTGGAATGGCTGAAGGGTCAGGCAGAGCTGGAGGGGCAGGAGGAAATTCAGGACATGAAATACCTGAGAGACTACTGGAATGACCCCCAGCTGGATGAGAAAGAGTCTTTCCTGCGAGACTACATGCTTAACAAGAGATACCTGGAGGAGGATGAAGAAGAGAGGATCCCCTCCTATAATGAGCTGATGCAGGATGATGTGGATGACTCAGAGGATGAAGGAGAATTATTCCTGCATAAACAGGAAGACTTTGAGAGGCATTACAACTTCCGCTTTGAGGAGCCTGATGCTGGAAAGGTAAAAGGACGTCAACATCAGCATGATTTGTCTTCAGGTTCTGTTGAGAAGGAACAGAAGCAGCAACAGCTGAAGGAACTGAAGAACCTGAAGCGAGCAGAAATCATGGACAAACTGAAGAAACTTCAGGAGCTGACAGGAAATGAGCAGCTGGCCTTCAATGATGTTGACCTGGAGGGAGACTTTGACCCCCAGCAACATGACAGACTTATGGAGAAGTTCTTTGGGGATGAATACTATGGAGGGGAAGAGGAAGAGAAACCACAGTTTGATGGTGACGATGATTTAGAAGAAAATTGGAACTGGGATACATGGGTGGGAAACGAGGCGAATGAGGAAGAGGATTGGGAAGAGGAAGATTATACTATAGAGGAAGAAAATCAGCCCAACTGTGAAGATCCTGACTTTATAATGGATGCTGACTATGACCCAAGTCAACAGCCCAAGAGGAAGAAGTCCCTCTTTGCAGAGATCATCACCAAAAACAAGCCTGTCTTTGATCCAAAGGAGAAGACCTTTGAGCAGTACTTGGACGAGTACTATAAACTGGATTATGAGGACGTCATTGATGACTTGCCATGCAGATTTCGCTACAGAGAAGTTGTACCGAATGACTTCGGCCTGTCCACTGATGAGATCCTGAAAGCAGAAGAAAAGGAGTTGAATCGCTGGTGCTCACTGAGGAAGACCTGCATGTACAGGTCCGAGAAGGAGGAACACTGTGACGTGAAGAACTTCCAGATCAAAGCACGGAATACCAGGAAGAAACAGCAAGTGTTTGTGTCTTTGTATAATGAAAACGCCGGTCAGGAGGAGCTGATGGATTCTAAGGGGAAGGTGGGTAAGAAGAGGAGGGATCGTCTAAAGCAGGCCGAGGTCAAGATGGAGACGAGAGATCTGACAGAAGAGACATCTGAAAGACTTCCAGCAGACAGCATAGAGCAAGCAGACATCCAGGACCTCAAAGAAGTCGCTGCAAAGGATGAAGGGGAGGATGACGAGGAGTTCCTTGTTCCTAAGAAAAAGATGAAGCAGGAAGAAACTGCAGTAACCCCGAAAGAGGAGGTGGCCAGTAAAAAGACTGAAAAACCTAAATGGCCTAAAAAGAAAACAAGGCGGCCAGGTGGACGCCTGCTGTCCAGATCCATGACGGTGAAGTTGGCTGGCCGAGAGTTCAGCAGACAGAGACTCCAAGCCTATGGGCTGAATCCAAAGAGAATTTACTTCAGAGAGCTGTACAGACAGAAACGAAAAGAACGAGAAAAAAAGGAAAAGCAGGAGAAAAAGAGCAAACAG

Function

NR:

description
Kri1l protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04376314_04386958.mRNA True 2178 mRNA 0.47 19 4376314 4386958

Neighbor

gene id symbol gene type direction distance location
CI01000034_04370706_04374491 SPC24 coding downstream 901 4370626 ~ 4375413 (-)
CI01000034_04350907_04363668 NA coding downstream 12631 4350606 ~ 4363683 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding downstream 56187 4318544 ~ 4320127 (-)
CI01000034_04239062_04242494 NA coding downstream 133674 4238771 ~ 4242640 (-)
CI01000034_04216451_04218876 NA coding downstream 154433 4216212 ~ 4221881 (-)
CI01000034_04392399_04400096 LDLR, LDLRA coding upstream 5242 4392200 ~ 4400096 (-)
CI01000034_04431146_04446849 SMARCA4A, SMARCA4 coding upstream 44188 4431146 ~ 4447168 (-)
CI01000034_04451917_04454531 NA coding upstream 64501 4451459 ~ 4454531 (-)
CI01000034_04466151_04467388 RLN3A coding upstream 78894 4465852 ~ 4467480 (-)
CI01000034_04630595_04640739 NA coding upstream 243583 4630541 ~ 4640987 (-)
G172480 NA non-coding downstream 19760 4356313 ~ 4356554 (-)
G172475 NA non-coding downstream 41541 4334149 ~ 4334773 (-)
G172422 NA non-coding downstream 84568 4291531 ~ 4291746 (-)
G172421 NA non-coding downstream 85460 4290653 ~ 4290854 (-)
G172420 NA non-coding downstream 86219 4289847 ~ 4290095 (-)
G172456 NA non-coding upstream 18677 4405635 ~ 4409237 (-)
G172488 NA non-coding upstream 81976 4468934 ~ 4469211 (-)
G172504 NA non-coding upstream 112046 4499004 ~ 4499747 (-)
G172507 NA non-coding upstream 128913 4515871 ~ 4516396 (-)
G172508 NA non-coding upstream 129535 4516493 ~ 4516717 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 204144 4165373 ~ 4172272 (-)
G172151 NA other downstream 978501 3391144 ~ 3451802 (-)
G172016 NA other downstream 1139699 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1864793 2510061 ~ 2511521 (-)
G172593 NA other upstream 606002 4992960 ~ 4994943 (-)
G172800 NA other upstream 1402074 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1410612 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008501 NA coding CM030126.1 CM030126.1 2824461 ~ 2832172 (-)