CI01000034_04887739_04917230 (GRID2IPA)


Basic Information

Item Value
gene id CI01000034_04887739_04917230
gene name GRID2IPA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4887717 ~ 4917230 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04887739_04917230.mRNA
ATGATGAGAAGATTTTTGAAGAGCCAGAAGGGCCGTTTTTCTCTTCGCCAAAGCCGATCGGGATCCCGCAGTGCCTCCAAAGATTTCTACCCAAATCCTAATGTCCTGAGAGAATTCCCACTGAATATTGAACTGGCCCTTCCAGCAAATAACCAGGGTTGGCCAGAGGAATTTGGCTTTAAGCTGGGTGGAGATGGACCCAGTTACATTCTCTCTGTGGTGGAGGGCAGCAGCGCTTACATGGCTGGGCTGCAGCCAGGTGACCAGGTTCTGGAGATCGACGGGCAGAACGTCTCCACCCTCAGCACCAAAGCTCTCATCGCTCTGGCTCAGACCCTCAAGACTGTGCCGCCCAGCATCGGAGTCGTGTCTAGAATTGAACAGATAATTCAGATCTCTCTTCATTTTCCTTTGCTTTTGCTTTGCAAAAACTTGCCACCACAGATGGACATTGCCCCAGGGCCTGATGGTCGTTTTGGCTTCACCATAGTGGGAGACAGTCCCCTGCTGGTGGAGGACTGCATGTCCAACTCTCCAGCCGGCCGGAGTGGACTGCGAGCAGGAGACTATGTAATGGAGGTGAATGGGATTCCAGTGAAACATCACGAGACGGCGGCGGCCATGATCAAGGCCTCTCAGGGACGTACACTGCGTCTGGGTGTGCTCCGCATGAACCGCTGGCAGAAACGCACCAGCAGCAGCATGAAAGAGACCTATCAGAGCGGAGACATCGTGAGGCAGGACCGCAAGCACAAAGCTCTGGAGTTCAACAAGAAGGTTGAGGAGATTTTAGGGGAGGAGCCTGAGGTGAAAGAGAGGCTGTTTGATTTGCTGAAGCAATATGCAAATGAGAGGGATGTTGAAGGGTTAGCATCCACACTTCCAGAAATACTGCTCACCGAGGAGCATCAGCAACTGATTGACAGCATCAGGATCTTCATCCCTAAGAAGCACAGGCAGCGCTTTGATGAGATGGTCTCTCAGAGTTTGATCAGTCGGTTGAGGGGCCGAAGCTTCAGCGAGCACAGGAACAATCGCCTACGGCGCAGCCGGAGCGAAGACCACCCCGAACGACTGCTGTCTGTGTCCACTAGAGCCAGTTCTGTGCCCCGGACCTCAAATGAGGATGTGGCCATGCCTCCTGCTCGTGGCCTCCGCAAGACCACCTCTCTCATCGCAGGCCATTCCAGCTCCTTCTCCACCCGCAGGACAGTACGCGTGTACAAAGGGAACCAGAGTTTTGGGTTCACTCTGCGTGGCCATGCTCCAGTCTGGATTGACTCCGTAATACCAGGCAGCCCTGCTGAGAAGGCGGGTCTCAAACCTGGAGATCGCATCCTGTTTCTCAATGGGTTGGACATGAGGAGCTGTTCACATGAGAAGGTGGTGTCTATGCTGCAGGGGAGTGGGGCAATGCCCAGCCTGGTGGTTGAAGATGGCTCGCCAGCCTTCACCATGCCTGAACCAGAGCAGGTGGAAGTTTCTCCCCGCTCCCGTGCTCCTGTGCTCAGCTCCCTGCAGTGGGTCGCTGAGATCCTGCCTCCCAGTATCCGCGTACAGGGCCGCACCTTCAGCCAGCAGCTCGAGCACCTTCTCACACTTCAGGAGAGATACACCATTTGCAAGGCTCTGGAGGCCTTCTTCCAGCACAGAAATGTAGACACTTTGATTGTGGACGTCTTCCCTGTGTTGGATACCCCAGCAAAACAGGTGATCTGGCAGTTCGTTTACCAGTTGCTGACCTATGAGGAGCAGGAACACTGCCAGAACAAGATTTCCCGCTTCCTTGGCTATAAAGTCACACTGCCAACAGCAGATCCTGAACCTCCAGCCCATGAGCCTCATCGTCGCAGCAGCTCCATGAAGGTGACAGGAACCACCTATAGGAGCAGTGTGAGGGGACGCAGCTCAGATGATCTGGTTATCGGCACTCACCTGGGCATGGGAATTTGCTCTGAGCCAGTGGAGCTGGCACCTATGAGACTGACTCCTGGAGAGAGACAATCAGGGGATGGAACGTCATTACCAGAGACACCCAACAATCTGACTAATCTGTCAGCTGTGTATGCCGAGCTGGAGAATGTCTATGCCGGGAAGAGATCCAAATCCCTGAAGAGTCGGCCTCCTCCTGCTCCTGACACTATGGTTAGCGTGGATGTCTTCCCGCACGCTTCCTCACAGTCTGTCAGGGCACACTCTTCCTCTCCATCTGTTCGGGCTACTTCAGGTAGCCGCAAATCTGCATCAGCGCAACCTGTGCCGCCTCCTCCGCCACCTCCACCTCCTCCTTCACAGCCTGACTCTTGGAATCAGGAACCTCCCCTCAGTCCTCAGTGCCCCTGTTACCCTCCAGGTCTTCCCTCTCAAACAAGTGCTGAGTCCAACCCCTACATCAGTTTAGACAGCCCACCTCTCTCTCCACCCTCTCCTCCCGACTACCCTCCTAGTCCACCCATTCGCAAGAAGCGCTATACCTTCTCTCGTCCACCCCGTACCCCAGACACAGATCTGTTCATGGAAGCTCTGAGTGAACAGCTAGGACAGCAGTTATCTGTGGATGACTTCCTGTCACCAGAAAATGACTATGAAGAGATGACCTTCCGTCGCCACCCTGGACCTCCTCCTCCGCCTCCGCCAAGGGCTAACCCGCCTCCAAAACGACAGTCCATTCATAAGGTGTTGCCCACGCGTGATGAGATGATGACTCAGCATCAAGTCCTTCAGGAGCACCACTCACTTCCAGTTCAACCAACAGCCGGCCACCCTCAGCAATCTCAGCAGCAGATGCACCAATCTCTGCCCCCTATGCACTCTCCAGAAATAAACCAGCCATCCATCCCCAGTCACGCAATCTACGATATGCACCATCAGGGTAATCCAGCCCACCAGGTTCATCAACACCACCAGATGCAACAGGATCACCAGATGCATCAAATGTATCAAAATAAACCCAGTCACCAATCTCAGTCAATCAAAGTGCACAAAAGCCGTCACTCACACCAGACTATTCAAACTCAGCTCTCTAGTTCTATGGATAGGCTTGATAGGATTGAAAGAAAAGAACGCTCGGATAGACAAATCTATGAGATGCAGCCCCAACCCTTGCATTCAGATCAACAAATAAACCATGCTTATCAGATGCATCAGAGTCATCAGGCTCATCTCTCAAGCTCTATGGATAGACTTGACCAATTGGAGCACCTCCAGCGCTTGGAACGCTTGGAGCATTTGGAGCGAATTGAGAGACTGGAAAGGGCAGACAGACAAATGCACAGAGCGCACATGGCTCAAGCCGTTTCTCAAGCTATTCAACCATCTCAGCAGACTCAGCAACAGTACCACCACCAGATGAACCAAGCTCATCAAGCCTACCCACCCAACCAGCCTCCTCCGCCAAACCGCCACATTCACCAGATTGAACACATACATCAGGCCTCACCGCAAAAATCAGATTCCAGTCATATGAGTGTAAAGAGGCTACGCTGGGAACAGGTGGAAAATTCTGAGGGAACCATTTGGGGACAGGTCCATTGTCATGTGTTTGTCTCACTCCATAAGAACGAAATGTATAAGGACAGATGTGTTTTCTCACTACAGTTAGAAGAAGACTCTGATTACGACAAGCTGAGTGACATGGTGAAATACCTTGACTTGGAGCTTCATTTTGGAACACAAAAGAGCCCTGAGCTCTCACCTCAGGTGGATACTTTCAAGAAGAAAGATGTGGTGGAGATTCTCTCCCATAAGAAAGCCTACAATGCTTCAATCTTGATTGCCCATCTGAAGCTGTCGCCAGGCGAGCTACGGCAGGTGCTGATGACAATGTCGAGTGAACGTTTGGAGTCACCACATATTAAACAACTGCTCCTGTATGCACCGGACGATGATGAGGTCAGACAGTATGAGCAGTACAGAGATGACCCAAGTAAACTCAGCGAGCCTGATCAGTTTGTCCTACAGATGCTTTCTGTGCCAGAGTATAAGACCCGCTTGAAAAGCCTGCATTTTAAGACTACGCTGCAAGAGAAAACAGAGGAGATGAGAGGGGCCTACGACTGTGTTTTTAAAGCTTCACTGGAGCTCAAGAACAGCAAAAAACTGGCCAAGATTCTGGAGTTTGTGCTGGCTATGGGGAATTATCTGAATAATGGCCAACCCAAGACCAATAAAACAACTGGATTTAAGATCAATTTTCTCACTGAACTCAGTACCACCAAAACAGTGGATGGAAAGTCAACATTTCTTCATATCCTGGTGAAATCATTGTGCCAACACTTTCCTGAGGTTCTGGACTTTAGGAAGGAGCTTGTGACGGTGCCACAAGCAGCCAAAGTGAATCAGAGAAACATCACCTCCGACTTTAATGACCTACATGCCACAATCCAGGACATTCGGTTAGCTTGCCAGAAGATGCCAGCTACTGCTGAGGATCGATTTGCTGTTGTTATGAGTGTATCCTCCATCAAAATATCTAAAATGGCTACAGTAGATGCTCTTATTGGATTTCTGGAAAACAGTCACCCTGCAGTGCAGTCTCTGGAGTCTCTGCAGCAGCTGGCGATGGAAGAGTTCTGCAAAGTCGCGTCATTCTTCGGTGAGGATGGAAAGACCACCACCACTGAGAGTTTCTTCGGTATCTTTGCTGAGTTCATTGCCAAGTTTGAGCTGTTTTTAGACATGCTCTACTCACTTAAAACACAACTTGCCTATTTAACAAACATTAACAATGTCCATTACAAGGCGAACACAAACACAAAGAACATAATTGATGCACTGTCAAACCCAAAGAAATAAAAGTTGAAATATGCACAATAAA

Function

symbol description
grid2ipa Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human GRID2IP (Grid2 interacting protein).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04887739_04917230.mRNA True 4816 mRNA 0.51 25 4887717 4917230

Neighbor

gene id symbol gene type direction distance location
CI01000034_04870434_04878415 SLC5A11 coding downstream 9302 4870361 ~ 4878415 (-)
CI01000034_04823597_04824920 NA coding downstream 62582 4823321 ~ 4825135 (-)
CI01000034_04710539_04725888 TNPO2, TNPO2.S coding downstream 161829 4709413 ~ 4725888 (-)
CI01000034_04690669_04706837 NA coding downstream 180758 4690487 ~ 4706959 (-)
CI01000034_04652096_04678983 TMEM104 coding downstream 208680 4651934 ~ 4679037 (-)
CI01000034_04921458_04934523 E4F1 coding upstream 3939 4921169 ~ 4934523 (-)
CI01000034_04951993_04959847 NA coding upstream 34300 4951530 ~ 4959847 (-)
CI01000034_04978655_04981311 HAGH, HAGH.L, HAGHL coding upstream 60844 4978074 ~ 4981311 (-)
CI01000034_04988799_04990480 MSRB1A, MSRB1 coding upstream 71451 4988681 ~ 4990480 (-)
CI01000034_04997343_04999344 RPS2, RS2 coding upstream 80088 4997318 ~ 4999344 (-)
G172627 NA non-coding downstream 42289 4843454 ~ 4845428 (-)
G172626 NA non-coding downstream 46221 4841265 ~ 4841496 (-)
G172551 NA non-coding downstream 265330 4622142 ~ 4622387 (-)
G172542 NA non-coding downstream 279501 4607979 ~ 4608216 (-)
G172541 NA non-coding downstream 279941 4607523 ~ 4607776 (-)
G172633 NA non-coding upstream 30651 4947881 ~ 4948092 (-)
G172609 NA non-coding upstream 67648 4984878 ~ 4986139 (-)
G172643 NA non-coding upstream 135170 5052400 ~ 5052726 (-)
G172644 NA non-coding upstream 135896 5053126 ~ 5053360 (-)
CI01000034_04216451_04218876 NA other downstream 669975 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 715547 4165373 ~ 4172272 (-)
G172151 NA other downstream 1489904 3391144 ~ 3451802 (-)
G172016 NA other downstream 1651102 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 2376196 2510061 ~ 2511521 (-)
G172593 NA other upstream 75730 4992960 ~ 4994943 (-)
G172800 NA other upstream 871802 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 880340 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026260 grid2ipa coding NC_007114.7 CM002887.2 18675716 ~ 18711288 (-)