CI01000034_04921458_04934523 (E4F1)


Basic Information

Item Value
gene id CI01000034_04921458_04934523
gene name E4F1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4921169 ~ 4934523 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04921458_04934523.mRNA
ATGACTGAAGAAAATAATAATACGGCAGCAACAGTTACCGACCAAACGGAGCATAGCAACATCATCACCATCCAAACCACTCTTGGAGACGAAGATGAGGATATTCATAAATGTGGGAGATGTCTGGAGGAGTTCTCCGCTCTGGATGCTTTCATCCAACATAAACTCAACAGGAACTGCAAGCGTCCTCTGCAAGACCATCAGACAAATGTTGTCCATAATGAAGGTGATTCCATTGAGGTGAAAATAAATGAAAATGATTGTTCATCTGATGAAGCGGGAACATCCAGTGCAGACAAGACAGATAAAAGGGCGACAGCTGGAGGAAAAAAAAGAAGCCGCTCTGCAAGCGAGGATGACAGTCCTAGTCCTGCAAAAGTGGTTTGGAAGTTAAACGCAGAGGGACGATACATCTGTGACATTTGTGATAAGACGTTTAAAACGACAAATATTCTGAGAACCCACATGTTCACGCACACCGATCAGAAGGACTTCAAGTGTGAAATATGTGAGACTGCGTTTAGGACCAAGGGTTCGTTGATCCGACACAAGCGTCGACACACAGATGAGCGCCCGTACCGCTGCAATCAGTGTGGACTTGCGTTCAGAGAGTCCGGAGCTCTAACCAGACATCTGAAGTCTCTCACGCCTTGCACTGAGAAGATTCGCTACAGTCAGTGTAAAGAGATACTTGTCAGCAAAGATGGAGTTCAGAAAGAAGTTCAGCCGTCACCTCCTGAACCTGAGAAGGAGCAAATTCCTGTTGTGAGAGTTGTGGAAGCTGGCCAGGAGATCATCCAGATCGAGGTGGTAGGACAAGTGCAACAGGTGGTGTCTCAGCCTCAAACTGCGACTGTGGTTGAAGCCGACAATCTAATCTGCCAGGCCATCATCAACTCTGGCATCGCGCTGGAGACCGAAGCCACAGAGGCAGCCGAGCAGGCAGAGGCTCGATCACCTAAAGCGATCCTGCAGGCTCCCGAGGCCGAGGCCAGACTCACTGACATCCAGGTGACAGAAGAGTGTGTGGAGACCATGTCCGAAGAGATGCAGGATTCATCTGTGAAGGAAGAAGAACCTGTTGAGTCAAAATTATACAAATGTCCGCACTGTGAGCGCATGTTCAAGACATTGGCCTACCTGAGGGTCCATGTCAAAGGGCATGTTGGAGGCTGTTTTGCTGCACAGCAGAAGGACTCTGAAAACACAGGGAGCTCTGAGGAGCAGGAGATGACAGCTGAGAACGTCTCCACCACTATCGTATCGGACGACCCTCATGCTGTGCTGGTGGAGTTCTCCTCAGTAGTGGCTGACACTCAGGAATATATCATAGGGGCACCAGCTGAGGAAGCAACTCAAGGGGAGGAAGTGGCAATAATTCAAGACAATCAGCACCAGATGGACAGTCACATCATGAAGGTTGTGCAGCAAATCGTGAGCCAATCACACGGAGGCCACCAGATCATCGTGCGTAACGTGGCTGCCGACGAAACCCCCGGCATCTCGGACTGCGGAGACACCATCACAATCGCCACACCAGAGAGTTTGACCGAACAGGTGGCAATGACACTTGCAAATGCCATTAGCGATGGCACAATCCTTACCACGACAACAGAGGGCGCTGTCGAGGCGCCCCACACCACAGTTACTATGGTAACATCCGAGAACATTGAGCCAATTGAGCAGGAGGAGCAGTATGTCATTGCTTCACCTGACGAAATGGAAATCCAGACTGTGGTAGTGCTGCAGGTTATACTAATGAGCTACTATGCCATTTTCAATGGACAGTACAGCCATTTGACTACAGATATTACACACCGAGATTTATTATACAGCTTTTATGGCAGTGATGCCGGCATACCGACATTTCTCTCCTGCTGAATGTCATATAATCATATACGACTATCATCTACTCATCATGAATATGTAACATAACATGTTGCCACCAATAGAACAACTGGCAGGGAATGAAAGTACAAAATATGAAATATATTTTTATGCACCTCTGTATTTTTTCAGTCATTGATCAGTTCTCATTTCTGCATATTTACTAATGCACAATTTGCACAGTCATCTCCTAAAAGGAATATTCTGTGCGCAAAAAGCATGTTAAGCTTTATTGACAGCGTCTCTGACATATTTCATCCGCCATTTGACAAAAACAAATAAA

Function

symbol description
e4f1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell division and regulation of growth. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleoplasm. Is expressed in notochord. Orthologous to human E4F1 (E4F transcription factor 1).

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04921458_04934523.mRNA True 2170 mRNA 0.47 13 4921169 4934523

Neighbor

gene id symbol gene type direction distance location
CI01000034_04887739_04917230 GRID2IPA coding downstream 3939 4887717 ~ 4917230 (-)
CI01000034_04870434_04878415 SLC5A11 coding downstream 42754 4870361 ~ 4878415 (-)
CI01000034_04823597_04824920 NA coding downstream 96034 4823321 ~ 4825135 (-)
CI01000034_04710539_04725888 TNPO2, TNPO2.S coding downstream 195281 4709413 ~ 4725888 (-)
CI01000034_04690669_04706837 NA coding downstream 214210 4690487 ~ 4706959 (-)
CI01000034_04951993_04959847 NA coding upstream 17007 4951530 ~ 4959847 (-)
CI01000034_04978655_04981311 HAGH, HAGH.L, HAGHL coding upstream 43551 4978074 ~ 4981311 (-)
CI01000034_04988799_04990480 MSRB1A, MSRB1 coding upstream 54158 4988681 ~ 4990480 (-)
CI01000034_04997343_04999344 RPS2, RS2 coding upstream 62795 4997318 ~ 4999344 (-)
CI01000034_05006303_05007855 NA coding upstream 71594 5006117 ~ 5007861 (-)
G172627 NA non-coding downstream 75741 4843454 ~ 4845428 (-)
G172626 NA non-coding downstream 79673 4841265 ~ 4841496 (-)
G172551 NA non-coding downstream 298782 4622142 ~ 4622387 (-)
G172542 NA non-coding downstream 312953 4607979 ~ 4608216 (-)
G172541 NA non-coding downstream 313393 4607523 ~ 4607776 (-)
G172633 NA non-coding upstream 13358 4947881 ~ 4948092 (-)
G172609 NA non-coding upstream 50355 4984878 ~ 4986139 (-)
G172643 NA non-coding upstream 117877 5052400 ~ 5052726 (-)
G172644 NA non-coding upstream 118603 5053126 ~ 5053360 (-)
CI01000034_04216451_04218876 NA other downstream 703427 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 748999 4165373 ~ 4172272 (-)
G172151 NA other downstream 1523356 3391144 ~ 3451802 (-)
G172016 NA other downstream 1684554 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 2409648 2510061 ~ 2511521 (-)
G172593 NA other upstream 58437 4992960 ~ 4994943 (-)
G172800 NA other upstream 854509 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 863047 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026261 e4f1 coding NC_007114.7 CM002887.2 18714143 ~ 18737126 (-)
rainbow trout (Oncorhynchus mykiss) G2350618 NA non-coding NW_023493685.1 JAAXML020000486.1 423865 ~ 424470 (-)