CI01000034_05441613_05448148 (RAB5C, RAB5B)


Basic Information

Item Value
gene id CI01000034_05441613_05448148
gene name RAB5C, RAB5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5441538 ~ 5448148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05441613_05448148.mRNA
GACCCTGTCGTATCCAGTGAGGACCACTCTCAGATCCAGTCAGCCCTCTCCTCTCCTGTTGTCCAGCCTGTTGGCATGGCGGGGCGAGGTGGACCAGCGCGGACCAATGGTGCCGCCCCCGTCGGGAACAAAATCTGCCAGTTTAAACTGGTCTTGCTAGGAGAGTCTGCCGTCGGCAAGTCCAGCTTGGTGCTCCGTTTCGTCAAAGGCCAGTTCCACGAGTATCAGGAGAGCACTATTGGAGCTGCTTTCCTCACACAGACAGTCTGTCTGGATGATACAACAGTAAAGTTTGAGATTTGGGACACGGCCGGACAGGAGCGATATCACAGCCTGGCCCCTATGTATTACAGAGGAGCCCAGGCGGCCATCGTCGTCTATGATATTACTAACACAGACACATTCACTAGAGCAAAGAATTGGGTGAAGGAGTTGCAGCGTCAGGCAAGTCCAAATATTGTTATTGCTCTGGCTGGCAACAAGGCAGACCTGGCCAACAAGAGAGCTGTTGATTTTCAGGAGGCGCAGGCATACGCAGACGACAACAGCCTACTCTTCATGGAAACGTCTGCAAAGACCGCCATGAACGTGAACGAGATCTTCATGGCTATTGGTACGACTCTCTTCAAGCACAGAGCAAAACACAGCAACATGACACCAGCTTCCCCTGCCACAAAGACGCTCAACTAGACACCACACCTAATCATTCAAATACCGCTGTTGATTTAATTCAGATCAAAGCAACCTAGTATGTTTATGAAGAAA

Function

symbol description
rab5b Predicted to enable GTPase activity. Predicted to be involved in endocytosis; intracellular protein transport; and regulation of endocytosis. Predicted to be active in early endosome; endocytic vesicle; and plasma membrane. Is expressed in pronephric duct; pronephric mesoderm; pronephros; telencephalon; and yolk syncytial layer. Orthologous to human RAB5B (RAB5B, member RAS oncogene family).
rab5c Predicted to enable GTPase activity. Acts upstream of or within several processes, including angiogenesis; gastrulation with mouth forming second; and regulation of endocytosis. Located in early endosome. Is expressed in axial vasculature; blood; and intermediate cell mass of mesoderm. Orthologous to human RAB5C (RAB5C, member RAS oncogene family).

GO:

id name namespace
GO:0005811 lipid droplet cellular_component

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05441613_05448148.mRNA True 765 mRNA 0.51 4 5441538 5448148

Neighbor

gene id symbol gene type direction distance location
CI01000034_05428767_05438942 KAT2A coding downstream 2325 5427529 ~ 5439213 (-)
CI01000034_05419465_05426380 NA coding downstream 15158 5418660 ~ 5426380 (-)
CI01000034_05356235_05375111 NA coding downstream 66085 5355899 ~ 5375453 (-)
CI01000034_05302438_05326245 ZNF385C coding downstream 115293 5302288 ~ 5326245 (-)
CI01000034_05281481_05288563 NA coding downstream 152958 5281357 ~ 5288580 (-)
CI01000034_05462429_05465076 NA coding upstream 14232 5462380 ~ 5465076 (-)
CI01000034_05467255_05480455 KCNH4, KCNH4A coding upstream 19107 5467255 ~ 5480455 (-)
CI01000034_05491347_05493196 NA coding upstream 42907 5491055 ~ 5493255 (-)
CI01000034_05509621_05566772 NA coding upstream 61473 5509621 ~ 5566772 (-)
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding upstream 152984 5601132 ~ 5607169 (-)
G172680 NA non-coding downstream 224536 5211951 ~ 5217002 (-)
CI01000034_05176199_05177220 NA non-coding downstream 227486 5175614 ~ 5177220 (-)
G172719 NA non-coding downstream 280411 5160849 ~ 5161127 (-)
G172716 NA non-coding downstream 285853 5155486 ~ 5155685 (-)
G172714 NA non-coding downstream 288843 5152029 ~ 5152695 (-)
G172771 NA non-coding upstream 64380 5512528 ~ 5512796 (-)
G172696 NA non-coding upstream 80751 5528899 ~ 5535870 (-)
G172692 NA non-coding upstream 91737 5539885 ~ 5557975 (-)
G172776 NA non-coding upstream 129295 5577443 ~ 5577774 (-)
G172782 NA non-coding upstream 278233 5726381 ~ 5765635 (-)
G172593 NA other downstream 446595 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1223796 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1269368 4165373 ~ 4172272 (-)
G172151 NA other downstream 2043725 3391144 ~ 3451802 (-)
G172016 NA other downstream 2204923 3234963 ~ 3236615 (-)
G172800 NA other upstream 340884 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 349422 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location