G169061


Basic Information

Item Value
gene id G169061
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 12107 ~ 12883 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192039
TCTCAGGTACTTTTATGTGTTTTGTTTGTTTGTTTTATTTACTCTGACAATTTATGCCTGGTACTATTAAGAGGGACCATATTTCATCTACACTGGCCCCTCTTTACTGGTTACCAGTCCAGTTTAGAATTAAGGTATTGTGCTGCAGGGATGACATATTTTTGTAGGCCAACCTGGAAAATGAAGAAAAAAGCTCTGAAGAAAAGTGTATTATTCGGAAGCATAAATACAATGGACAGAAGTAAAAAAGTAAATGTAGGCTATAAATTAACAACAGCACGGTCACATGACTTCAACGTCACCACCATTAGGCTTCTGACAACTCTATCAGTCTTTATTTCAAAAACATTTCCCCTGAAAATTTGAGTTAGAATAGCTTGCAAGATCGTGATAATGAACACAATGAGGCTGTAAAAGTGGACGAGTGAGTAAATGAGTTTACATGTTCGACTGATGACGTTTTACATTTAATGTTAAAAACTTACCTTAAGACATATATTTGTATTGGTTTTCTTTTGTTTTATGTCTAAGTATATGTCTATCTATGTTATTGTGCACAAATTTTGTAAGCACTTTTTTTCCATTTTTTTGTATGTTAAAATTGTATGAAATGAGATTTGCAAAAATGTATACTTCCAAAACTGAATGCATAATGTATATTAGCCAGTGACAGATAATCAGGGAGAATTTTGGTGTGATTTGTTAACCTAACAAACCCAGTGTTTTAGTTAGGTTAGCAGCTTATTTCTGCCTCTGTGGAATTGTAGTTGAAATGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192039 True 777 lncRNA 0.33 1 12107 12883

Neighbor

gene id symbol gene type direction distance location
CI01000034_00123919_00185433 NTN1B, NTN1.L, NTN1A, NTN1 coding downstream 111036 123919 ~ 185433 (+)
CI01000034_00229261_00311362 USP43B coding downstream 216378 229261 ~ 311958 (+)
CI01000034_00393749_00410314 GRB2A, GRB2B, GRB2, GRB2.S, GRB2.L coding downstream 380777 393660 ~ 410338 (+)
CI01000034_00422322_00453621 BPTF coding downstream 408592 421475 ~ 453644 (+)
CI01000034_00455762_00459788 KPNA2, IMA2 coding downstream 442262 455145 ~ 459927 (+)
G169064 NA non-coding downstream 1302 14185 ~ 43159 (+)
G169083 NA non-coding downstream 31418 44301 ~ 44636 (+)
G169087 NA non-coding downstream 53726 66609 ~ 71966 (+)
G169052 NA non-coding downstream 88166 101049 ~ 102040 (+)
G169117 NA non-coding downstream 183509 196392 ~ 196748 (+)
CI01000034_00643011_00645310 RBX1 other downstream 630114 642901 ~ 645310 (+)
G169309 NA other downstream 956378 969261 ~ 969921 (+)
G169357 NA other downstream 1090657 1053543 ~ 1119019 (+)
G169394 NA other downstream 1137414 1150297 ~ 1193560 (+)
G169340 NA other downstream 1237336 1250219 ~ 1310878 (+)

Expression


Co-expression Network