G169087


Basic Information

Item Value
gene id G169087
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 66609 ~ 71966 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192077
TGTATTTTTGCTCAAATGCAGCCTTGGTGAGCAGAAGAGACTTCTTTCAAAAACATTTAAATAATTGTTCGGACCCCAAACTTTTGAATAGTAGTGTATCTTCAAACAGACAGTTTTAGAAGCTCTAAAGAAAATAAAAGTCAAAGAAAAGAAAATCCTTTATGAATCCTCAGTCAATAACCTGTTCAGATAATGGACATAAAACACACTGACACAACTTTGTCTTGTCAGCAGCCCACAAGCTTCCCAGTCCTCACACAAAGCAAAAGAAAATGCTGTTGTAAGAATAAAGAGAGAGAAGAGAGCATTTTATAGAGTGGATAATGCATTTAAATGATGATTTACCTTTTACATTTTTCAGCCGAATGCCAATAATCAACTTCATTTGACATTACTGTCAAGGCAAATCAAGAGATTTATTATGGGTATCATCATTTTCATACATTTTAAGGGCAATCAGCATCATCCAAACACATCACTGCTGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCACCAGCAGCAGTGACATGGGAAATGAGCTGTATTTCCCTACAGCTGTGGACAGTCTTCAGCCAATCAACACAAATGTCACAGACGCTGGATCCTCTGTCAGAGCTTGATGAAGAAGAATCGGCCATCTAAACAGAATCCTAATTATACTGTCCAGAGCGAGAGTCTGGTTATTTTAAAATACCAGCAAATTTGACATCAGCAGCCATTTATTTATTGCCTGTAATTTCTCAGTTCCTTCCTGCCTACTGTAATAAGGAACCTGTCAATAAAGCCACACACTCACTGACCTTGGCTTAATAAAGCTGGTGCACAAGATAAGATTTGTTGGGACTTTTCTTGGGCGAGGGAGACTTCACTAATGTGAAATCAGCATAAAATCACAAGAAGTGTATTTTAGGACCAAAAACTTCTTTCAACAAATGGTCAATGAATGTTCATATTCAAACTTGAAAGGTCAGACTATTATACAAGATGTTTTATTTTTTATTCATTTTCTTTATATTAAGTTTGCGACCTTGGTTTTCATGATTTTATTTATATAGCAATAAAAGATGATTTTATGAGTCTGTATAATCTAAAAGGCAACAAAGCATTGGTTCATTCATCAGAATTCCTTTATATTTATCAGTGGAAAAATATCATTTAGAGGCATGAAAATAACAATAGAAGCATCAGCACACATACAATCCTGCACAACCAAGCAGCATAACATGTCAAGTGTCCATGAGCACTATATTTCAATACTTTTTTTGTTGCATATTAATAGACATTTCTCAGTTTCACAATTTGATTTCTTTTGTAAAGATAAAATACTTTAATTTTTTTTTTTTTTTTTGCATAAACACTATGATGCATCACAAATACTCTACTGTTTAAAAGTTTGGGGTCTGACAAATTTGTTTTTTAAAAAGTTGTTCATCTTCATACATTTATGCAAAAATACAGTGAAAGCAGCAGTATTGTGAAATATTATTACAATTTAAAATAACCATTTTGTAATATATTTTAAAATGTAATTTATTTCCCCTGATCAAATTTGTATTTTCAGCATCATTACTCCAGTCTTAAGTGTCACATGATCCTTCAGAAATCATTCTGATATGATGATTTGATGTTCAAAAAACATTTATGATTATAATCAAAAATAGTTAAAATCAGTTGTGCTGCTTAATATTTTTGTGGAAAGGCTATACATTTTTTCCCAGGATTCTTTGATGAACATAACGTTCAAATAACAGCATTTATTTTTGAAATAGAAATCTTTTTTTGTAATATTATAAAAGCCTATACTGTTACTTTTGATCAATTTAATGTATCTTGATGAATAAAAGTTTTAATTCCTGAAAAAATCTTACAGACCCCAAACATTAGAACAGAAGTGTACATGATTGTACATATAAATAAAATGCTATTAATGGGTTACTTAAGCACATTACAGTTGGTGAAGATAAAGGGTTCATACATTTGAAAGCAAACTACAACTGGGTCAGATATAAATATATCTGTTTTACTTTTAAACTGCATTATATTATGTCAAGCTGGGCACCACAAAAATACAGTTTTCATCAACATTGTAGTTAAAAATGCAGATGTAAAATGTGATAGAAGTCAGAAGCAATGGTGCACATTCACCTAATTAGTACGCAGATCTTCTGTTGTTCAGTTATATGGCATGATTTGAAAACTTGCTAATATTCCTCAATATAGCTAAATTTATGAAACATTTGTGAAGATTTATTACTGTGCCTCCAGTCACTTGCTGCACTATTTCAGAAGATGAGTAACAGTGCCTACCGTATAACAGTGAAAACTGGGATTGCCAGTTGGGATTACTATATAGTAAGCAAAAAACAGTATGTGCCAAAAGAAGTATGTCTGAATTCACATTACTCATCGGCCAACTTTACAGCAGAATAAAACATGTTTACAGCCTGGATCAAATTGTGGTTTTGGTCTATACGGCTAATTTTGCCCTTCATGACAACTCTGAGGGGGGTGAATTTTTTTATAACTCATCCGTTTAAATGATATTAAGTCTTAAAGTTCTGCATAATTAAGGGCATGACAGGTGAATTGCGCTGCTGTCTGTGAGCCGTCACTCTACCTCAGATAATTCTCTGCCGTGTTTGTGCTTTTTTCTGGATTATTTTATACACTTATAAAATAATATGGGCGGCTTGCTGCATTAATGGTCGAGACTCGAGACAAATGTGTGTCTGTGTAGATGTGCACACATGCGGAAGATAAACAGAACACACGTTGTTGGATCACCTTGGCATTGGCTAAAAGTTTTGTTCGTGAGATTTACTACAATGACAATGGTGGGAGGATATAAAACTCCAACAGCACTGCTTGGATATTATAAATAAAACTGCTGCATTTTGAAAAATTATACTTTGGATGCGGACTCATCTTGTGAGAGTCTAATGTATACGATCCTACAGTTTTACAACATAAATGCTGCTCAGATTGCATAATTTTTTGAAGAACGATGATGGAGAGCAGATCATTCAGAAGAAATGTGATGCAAACAATGGATAATATATCAATATTTCATGGATTTAACGCTTTTGTGGACAAAAAGTACTGTTTTTTTGTTTTTTAATGGACACTCATGGCTATTTTACCCACGTGCCACGGATTGGATTCATCTCGCGATCGCTATTTCATTCACAAGGTATGAAGTCCCGTTTGATTTTTCATGTTGTTATTTGCACACGACACAAATTACAATTAATTAAAAGAGTAGGCAAAAAGTCCCCGGATGACCTACTACTTCTGGTGAGATTTTGAAATGTGCGTTCCATGGACACTTTACTATTCCATGAGGCCACGGTAGAGGATTTGTGAATGAAACAACAGATGCTGGTAGGTCACGTGATAAGGGCAACATGGCGAATGTAGTACGTCCAGATTACATTCACACTAAACAAACTTTTTTAGTGGTCAGAAGCAATTACTTTTTTAAAACAGTACCTACTAAAGAGAGTTTTCGATTTCGAATGCTACTACTGTCATAATTGACCCTTCGCCAGGAGTTTGATTGACAGGCGATCTAACCAATCATAACGCCGAATCCGCCATTTTGTCCAACAAAGCAGTCAGGAGTTAGAAGATTAACCTCGGTGGACTTGAACTTGAAAAATGGTGTGTACTGACGTCTTTCCGCGGTTGAAACAACATTCCTTCTGATGTTCATTCATGTTTATTTGATGCAATAAATTAACTAGTAGGAAGAGATGATCGGTTCACGAACCGCTTGATCTGAGGCGCTACAACAATCTGTCACGACACATTAAAGAGCCACAAAACGTTTTTTATTGTTCGAATTTCTTAAAAAAAATTACACAATTTAAAAGCTGGGACTTTGTTTAATATCATAAGTAACCTGCTCTGTCTTGTCTGTCGACGTGTTGACAGTGTCCTCTTTGCTCTGCGATGTATTTTTCACTCTGTGTGGGGTGACAGCGCCATGGCTTGTCGGACAAAGCAACAGTAACTAAGGGGGGCGGGTCGTTGCGAAGGGTCAATTGATGGAAAATCTCATAAATAGTTAATATTTTGAATTAGTTTTTATATTTTCCATTTTCATTTTAATCTTACTTAAAGTATTAGTCATTTAATTGTATGTGTTTGGTCTAGTCTAGTATAGGTCTAGTTTTTATGATTTTTTTTATTTGATTATTTTAATTAATTAATTGTTTTAATTATTTTAGTACATCAAGATAAACTAAATGAAAATGAGAAATGTCACCTTGGTTTAAATACATAATATTAAATAACTTAAGTTTAGGTTTTTTATAGTTTATTTCAGTTTTATTTTATTTTATTTCAAGTAATGAAAATTTTTTGTTTATGGTTTTTGTTTTCATTTTAGTCAACTATTATAACCCTGCTGTGCACTGCATTCATAAATCAAAAATTCTCAATGCAGAACTTTTAGGTCAAAGAATTTTTCTAGCTTAACTGGTGATTTATACCTTGTCCAAGATCTGTGTATCACCCTCCTTATCAACAAACACTGACAGAATTTTTAGGTGAACTATTCCTTAAAATCCCAAGGACAATGTCAGTGTTTTTGGTGACATACATTGTGTCTGGCAGGTGAAGCAACTCCACAACAGATAATTTGCTCTTTTGCAAGAAGTAAGGGAGAAAATAATGTGCTAGCAAGAGAAAGAGTTACAATTTAACAACTGTTAATGGGAATCCAGCACTTGAGCCTGACTTTAGTCTTGAGCCTGACAGCTCAGTGTTAATTGTGAAAATGAACACACCATATCATCTAATCACACACACCTCAAATCTCCTCCATTAGGTGGTTAATGCAATAATGCTGCATAATATGCACATCAGTCGGGTGCCCATATACTGCCGTCTGTTATGAAATGTGAAACAGAGTGCTTGAAAATATTGTGCTGAATCACGGGTCTGAGGGCTTGTTTACTTGTCATTCTGTGCTACACTCTCTCCTGTTTTACATTGACGTATCTACATGACGGAGCAGGTGAAGCCACAGCACTCCTTCAGCAGGGTGACACCCGTCTTGGTCATGTAAGGAGATGAGGTCTGCTGGGCTCTGGACGTCATTCTCTTATCCTTGGTGTGATCTGAACAACAGAGAGAGAGAGCGAGAGAAATGCAGTGACCTTCTCTGAATCATTCTCAACATCTCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192077 True 5232 lncRNA 0.35 2 66609 71966

Neighbor

gene id symbol gene type direction distance location
CI01000034_00123919_00185433 NTN1B, NTN1.L, NTN1A, NTN1 coding downstream 51953 123919 ~ 185433 (+)
CI01000034_00229261_00311362 USP43B coding downstream 157295 229261 ~ 311958 (+)
CI01000034_00393749_00410314 GRB2A, GRB2B, GRB2, GRB2.S, GRB2.L coding downstream 321694 393660 ~ 410338 (+)
CI01000034_00422322_00453621 BPTF coding downstream 349509 421475 ~ 453644 (+)
CI01000034_00455762_00459788 KPNA2, IMA2 coding downstream 383179 455145 ~ 459927 (+)
G169083 NA non-coding upstream 21973 44301 ~ 44636 (+)
G169064 NA non-coding upstream 23450 14185 ~ 43159 (+)
G169061 NA non-coding upstream 53726 12107 ~ 12883 (+)
G169052 NA non-coding downstream 29083 101049 ~ 102040 (+)
G169117 NA non-coding downstream 124426 196392 ~ 196748 (+)
G169170 NA non-coding downstream 480969 552935 ~ 553203 (+)
G169172 NA non-coding downstream 483221 555187 ~ 556623 (+)
G169173 NA non-coding downstream 484762 556728 ~ 556959 (+)
CI01000034_00643011_00645310 RBX1 other downstream 571031 642901 ~ 645310 (+)
G169309 NA other downstream 897295 969261 ~ 969921 (+)
G169357 NA other downstream 1031574 1053543 ~ 1119019 (+)
G169394 NA other downstream 1078331 1150297 ~ 1193560 (+)
G169340 NA other downstream 1178253 1250219 ~ 1310878 (+)

Expression


Co-expression Network