G171177


Basic Information

Item Value
gene id G171177
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 169652 ~ 187879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU194463
GATCATAATATATTAGTATGCATTACGGGACAATACACAGCTTTTGCAAAGTACACAGTAAAACATCATATACAGGAGGACCATGAACATTGTAAATGTCTTCATCAAAAAAAAAGAAAAAGAAAAAGAATATATGTTCAGAGTCATTTTCCAAAATGTCTGGAAAACTGGTCAAAGTCTACTTGTGAGGTCAGGGTGTCTCCAAAGAACTAGACCATCTGTGAGTTTAATAAACCATGGTCACTGACTTTCAGTTCGTAATCACTGTCAGAGATTCAGAGCTGGACAGTGACTGAATGTAAAAGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGCGCGCATGTTCATGTCACATAGACATAGTACAACCCTCTCTCTACACTATCAACTAATGTAAACAAAGAAATCTAAAATTCCTTTTTTATTTTCAGAATATTCATGGCATAAAAAAACGGTTAATTGCATGTGAATATAATCTACTAAATATTGTACAAAAAAAACTATACAACTATACAAAAAACAGTAGAGCATATCACCTTAGTAAAGTACCAGAGCAAAGAAAGGTACCACATCAGTGATAACACAGAAAATTATTTGTTTCCCTTAATAATAAGAGCCATTTTATCAGATTTATTTTGGTAGGATGTAACCTTACGTTTGCATACACTGGTCAGCCATGAAGACCATTCAGGCTTGTGGTCATTGTTTAGTTATATTCTTGATCACTAAACCTTAGCAATGATTTAGTATCTAGAACATTAAAATTTCATCAAACTCTAGCTGAAGGACATTAAGCTTCTCTGATATCTCTTAATGATGAGAAATCTACTTCTGGGGAATTTCGTGATTATTGCATGATCAATATGTGGGAAATCTCACATTTCTTCTGTATAATATAATAGGATTCTGCTTATAATTGTGACCTACATTTTTTTAACAGTGAAGAGGGAACTTGTTCATAATGAAAATACGCTTCTTTTTGCAAATCAAAAATCATAAAGTGGTTAAAAAATAATAGTCTATTTGTATAACTAAACTCATACTACAACTAGTTATGGAACAGAAGGTAGACTTCACACTTTAAAGATCACCACAGTTATCAAAGTATCAAAGGCCAAAAGTATCAGCATAGCTTTTGGCACCAAATAATCATGATGATGTCATGCAATTTTGAACCAATCACAATTCTTCTGAACATCAACAGTGAGGTATTGTCAACAGATTTTCTATCCGAAAGGAAGGAATGTAAAGGATGTTATATCTAATTTAATGTGGGGCCCAAACGTCTGAGGGCGCTAATGAAACTGCTTTTATTTTGCACTTATTTTATTTTTCCACGAAAAAGGGGGAATGGGATCGCGACATCGTCCCAATGAGTCAAATGTGCACCGCAGGTCAAATAATTGTTAATAATAAATTTGCAGATTCATAAATATTTTGTCATTTAAATTCTTTTTTGTTTTACATTTCTTCAACCATGTTTAATTCCAGGTTTTAAATCCAGATATTCAATGTGCCCTCAGACTTTTAGACCCCACTGTATGTACTTTGAAACAAGGCCGTAACCATGTCTTGAACATTGGGAGGGGACCTTTTTTGGGGGGGGACAAAACGGCGCAATTTCATAAAAATGTTGAGTAGTTTTCATCACTGGATATTACTGTCGGTCACTGAATATTTAAATCATAAAACAGTTGTCAAATATTAAATGTTTAGCTACTTACTCGCCACGTACTCTTTCATTGCTAAAATGAAAGCGTCACATTGGAATTCGCACTCGTCTTCTGCAAACCATAAGCCCCTCCTTCTTTGATTTGATTGGCCAGCTCACTCATTCTGACAGTGATGAGCGCTGCTAGGCCACTAAGGCAGTCCAGCCTAAAAATGTAACTTTTAAAACTTTTTTGTCATCCTAACAACAAACAGAGGGGTGCGTAATGGAGTACAGCAGAACAGCATCAAGAATAGTAAATATTAGGGGGAGGGGACAATTTGGTCTTTTCTAATTACTGGGGGGGACCTCTCCCCCTCAATGTCTATGGTGGTTACGGCCCTGCTTTGAAATGTCAACCGCCAACACACTTCTTCTGAAGTGAAATGTTCATGTAGATAAATTGACTCAGTAGCTTGTTTCTTTTTGTGGAAAAAGACAGAAATCATAAAGAGACACCAGAAAGGATCACACATAAACGACTTTACATATATGTATACTTAATAGTAGGTGCAAATTCTGCAAAATTGAAGATATGAAAAAATAAAATCTTGATGGGAACCAATAAAAAAAAAAAAAAACGCTAAACGACAGAAGGCAAAACTGCACAAGTGGTTGTCCTTCACCACAGTTCTGATCAATCGTCAATCAACCTGCTCCGACTTGTAGGTGCTCGGGTCATTATTTTGTCTTTCCTTCTCTCCTGTTCTTCAATCTCTCTGTGTTTCCCCTCTAGCACTTGCCCCTCTTGTCACGCTGCTGGAATTTTCGAAGCCGACGGGCCCACAGGTCCTTCCACGGGATGAGCAGGCTGCCCTTGTCCGCCACCACGCCGCTCTGACCGCGGGAGTCGTCGTCATCAGAGCCCATGAGCAGGTACTTCCTTCCGGGTTTAATTTTGTGGCACTTGCAGGCCACATCTTTAGCGCGGACCCACAGGAGCTGGTCTCCTCTGCGAATGCGGTGTCCGCCCTGCTTATAGACGGATATGATGTTGATAGTGAATTTCCACCATTCGCTCGCTTTGTCTCCTTTTAGTACGTGAACCTGGACAGCGAAATCTTTTTTGCAGTATTTTTTCATGGTGACCTTCATCTTGCCCTTGGGGCTCTTACAGTGGGAGTCACAGTCTGAGGAAGATAGCAGACAGATAGCTAGTGAAACGCAGGTAAAATCTGTGTGAAACAACAAAATGAGTTTTTCAGCTGTGTTTGCAGGTGAAGGGGAAGCATAAGAAGACACAATCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194463 True 2961 lncRNA 0.39 2 169652 187879

Neighbor

gene id symbol gene type direction distance location
CI01000034_00101894_00115404 NA coding downstream 54248 101052 ~ 115404 (-)
CI01000034_00097095_00098729 MFSD6L coding downstream 70529 97026 ~ 99123 (-)
CI01000034_00071780_00082031 NA coding downstream 87621 71544 ~ 82031 (-)
CI01000034_00051315_00059354 TOM1 coding downstream 110298 50716 ~ 59354 (-)
CI01000034_00361018_00362033 MCHR1B coding upstream 173035 360914 ~ 362033 (-)
CI01000034_00368808_00390623 NA coding upstream 180607 368486 ~ 391307 (-)
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding upstream 370364 558243 ~ 561995 (-)
CI01000034_00571856_00577732 NA coding upstream 383977 571856 ~ 577775 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding upstream 411194 599073 ~ 603301 (-)
G171136 NA non-coding downstream 125553 43738 ~ 44099 (-)
G171131 NA non-coding downstream 126404 23190 ~ 43248 (-)
G171146 NA non-coding downstream 156767 11750 ~ 12885 (-)
G171272 NA non-coding upstream 102699 290578 ~ 335778 (-)
G171324 NA non-coding upstream 158970 346849 ~ 351155 (-)
G171339 NA non-coding upstream 209835 397714 ~ 399839 (-)
G171340 NA non-coding upstream 224314 412193 ~ 412427 (-)
G171341 NA non-coding upstream 224793 412672 ~ 413037 (-)
G171229 NA other upstream 41525 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 883734 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 1123650 1311529 ~ 1312780 (-)
G171755 NA other upstream 1676239 1864118 ~ 1866373 (-)

Expression


Co-expression Network