G171339



Basic Information


Item Value
gene id G171339
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 397714 ~ 399839 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU194657
TATAAAGTTGTATTTATTTTATTTAAATGTATATTTAAGTTTACATTTATGTTCCAACAAACTTGAAAAATTCATCTTGATAAATGATAAAAACTTGATAAAACTTTTATGTAAATCAAGTCAGTGTTCAATAAATGATGTTAAGTTTAGAAATGTTGTGCATCCACTTATTATTAGTGTGACATTTTAGCATGCAAATGAAGGGGAAAACTTCAAGATATCGGCCCTAAAAATCGGCAGCACATATCGGCCATCGGCTGACCCTGACCTCTAAACATCGGCATCGGTTATAGAAAAACCCATATTGGTCGATCTCTAATACTGATTAAAAAAAATGTTGCTTTTGAATTTGTTCCAAAGGGAAAGCATGGTGACTGTATTCAGATTCTCTGCATTGGCCAATGTCCTTTTCAATAACATTCAGACGTGAGAGGGAAGGTGGGGGACCAAATATCTGCCAGAGAACAGACTCAGAACTGTGGTTTGGAGGAAACAGAGCGTGCAACATCCTTCCGCTGCAAAGATTGATGGGTAGACAACCAAAGGAAGAGGAGAAAAAGAAGAAGTCTGTCGACTCAACAAGGGATGAACCATTGACAAAAATGGGTTAGGAACAATTAAAGCATGTGAGACATTCACTAAACGTCTAACCTGATGCCCATTTTCACTTGATATGGCAACAAATAGTAACAGAAAACCATGATGCTGGATTCCATATGTGGTTTTAACATATGGTTAGCACCTTTGTGGTTCACTTTTACTTTGAATTTTGCTTGTGAAGAATGTCACATGAGTACTACAGCCATCTACAATCTAACTATAACTAACTACAGTCACAATGGCAACAAAATTATAGACATACTCTAACCTGCGAGTAGTTTACGTTAATAAATAAATATTGTTTTCATGTACAATATTCACACAATGTACGTTTTGACAGATAATTTTAAAATCACCTTTAAAGATGTAAATTAAGTCAGTGACAACATTTTCGGTTAATGCAATCTCTGACCACACCTCAAAATTTACACAATAGTCTTAACATAAAAAAAAAAAAAAAAAAAAAGCCCGGCAAACTTTATACTCCTTCCCATTTTTGGAAACGATGATTGTCTTTTTTTGACTCAGACATACAATTGGGTGTGTTCATAACTGGAATTAAGTGGGTGCCCAGTCAGAAGTGTAGGAGGACGTGTTGGGTGGTTCACAGGACGATTTCAGTGCAGCAACAGAGTGAACAAACCCACAAAGCGAAATACAGAGAGAATTGATTGTGCAGTGCTCTCCCTGATGCATACTTAAAACATAATAGGGCGCTAACAGCTCTCTGCTAAACCCAAAAGACAACAACGAGATTGACACCATCCACTCAACGGCTTCAATCTGGAGTGAAAGCTACAGATGGCCATCATTTATTTATTTAGAGAGAAAGAGATCTCGCTAACTGCCTGCATCAAGTTTGGGTCTGATAATTTCCCCAACCACACGTACAAATGTACTTCCCACCAATACCCCTTCATCTACACAAAAGACCACATAGTAGAATCTCACGAAGCCTGTCAAAAGAACGTATAAATGTCTTTGTTCTGGGTGAACTATTCCTTTAAAGTCTATTAAACATTTAAAAACTCCTCCTGCAAATCTAAATAGCCTACTTAAATAAATAAATGCATAAAAAAACAAATGCATGCATGAATAAAGAAAGAAATGCATAAATGAGTGCATAAATTAATTAATAAACAAATGCATGAATAAATAACTGCATAAATGAATGCATGCATGAAAAAAGTGAAAACAGGGATGGAAATTTTAGCCTCCAAAAAAGACTGCAAAAAGGGTGAAAATCCAATCACAAGCCAAAATTGTAAACAGAAATTATTACTTTAACATCCAATAACACAATTATCGGCTGTGTTTGAAATCACCCCGTATACCTTCATT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU194657 True 1941 lncRNA 0.36 2 397714 399839

Neighbor


gene id symbol gene type direction distance location
CI01000034_00368808_00390623 NA coding downstream 6407 368486 ~ 391307 (-)
CI01000034_00361018_00362033 MCHR1B coding downstream 35681 360914 ~ 362033 (-)
CI01000034_00101894_00115404 NA coding downstream 282310 101052 ~ 115404 (-)
CI01000034_00097095_00098729 MFSD6L coding downstream 298591 97026 ~ 99123 (-)
CI01000034_00071780_00082031 NA coding downstream 315683 71544 ~ 82031 (-)
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding upstream 158404 558243 ~ 561995 (-)
CI01000034_00571856_00577732 NA coding upstream 172017 571856 ~ 577775 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding upstream 199234 599073 ~ 603301 (-)
CI01000034_00604811_00614185 MPST coding upstream 204927 604766 ~ 614674 (-)
CI01000034_00627328_00635193 NA coding upstream 227180 627019 ~ 635193 (-)
G171164 NA non-coding downstream 30031 74251 ~ 367683 (-)
G171324 NA non-coding downstream 46559 346849 ~ 351155 (-)
G171272 NA non-coding downstream 61936 290578 ~ 335778 (-)
G171177 NA non-coding downstream 209835 169652 ~ 187879 (-)
G171206 NA non-coding downstream 214349 183024 ~ 183365 (-)
G171340 NA non-coding upstream 12354 412193 ~ 412427 (-)
G171341 NA non-coding upstream 12833 412672 ~ 413037 (-)
G171309 NA non-coding upstream 41448 441287 ~ 442256 (-)
G171356 NA non-coding upstream 65573 465412 ~ 468708 (-)
G171382 NA non-coding upstream 153465 553304 ~ 553679 (-)
G171229 NA other downstream 130468 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 671774 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 911690 1311529 ~ 1312780 (-)
G171755 NA other upstream 1464279 1864118 ~ 1866373 (-)
G171835 NA other upstream 2041982 2441821 ~ 2446293 (-)

Expression



Co-expression Network