G171309


Basic Information

Item Value
gene id G171309
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 441287 ~ 442256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU194617
GTTGAATGGGTGCTGGAGTTGTGCTGGTGGTGGCAGCTGGTGCAGCTGTGGCTGGGACGCCTGATGAGGTTGTTGTGGTGGGAGCGGCGGGGGCAGCAGGGGCAGACGCTGGTGCAGGGGCCATGGGTGTGAACAAGAAACGCTGGACTTGGCCATTGGGCATGGCAGCCTGCATGAGCTGCTGACCGGGCCCCGGAATGACAGTCACCCCCTGAGGTATGACCTGCAGCTGGCCGGTGGTCTGACCTTGTCCTTGGATCACTACTGTCAACCCCTGGTTCCCTCCCTGAAGCCCCTTGGGTGAGCTGTGTGAGCTGGGCCAGAGTGAGTTTGACCTGACCCTGCTGTGGTCGGGGAGAAGAGGGCGTCTGTGGGGTCTGGGGTTGGTTCGGTGTGGAGAGGCGAGGAGGAGTGCCCACCGCCTGAGCACCTGAATTTGTTTGCACTGGCTGTTGCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU194617 True 459 lncRNA 0.62 2 441287 442256

Neighbor

gene id symbol gene type direction distance location
CI01000034_00368808_00390623 NA coding downstream 49980 368486 ~ 391307 (-)
CI01000034_00361018_00362033 MCHR1B coding downstream 79254 360914 ~ 362033 (-)
CI01000034_00101894_00115404 NA coding downstream 325883 101052 ~ 115404 (-)
CI01000034_00097095_00098729 MFSD6L coding downstream 342164 97026 ~ 99123 (-)
CI01000034_00071780_00082031 NA coding downstream 359256 71544 ~ 82031 (-)
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding upstream 115987 558243 ~ 561995 (-)
CI01000034_00571856_00577732 NA coding upstream 129600 571856 ~ 577775 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding upstream 156817 599073 ~ 603301 (-)
CI01000034_00604811_00614185 MPST coding upstream 162510 604766 ~ 614674 (-)
CI01000034_00627328_00635193 NA coding upstream 184763 627019 ~ 635193 (-)
G171341 NA non-coding downstream 28250 412672 ~ 413037 (-)
G171340 NA non-coding downstream 28860 412193 ~ 412427 (-)
G171339 NA non-coding downstream 41448 397714 ~ 399839 (-)
G171324 NA non-coding downstream 90132 346849 ~ 351155 (-)
G171272 NA non-coding downstream 105509 290578 ~ 335778 (-)
G171356 NA non-coding upstream 23156 465412 ~ 468708 (-)
G171382 NA non-coding upstream 111048 553304 ~ 553679 (-)
G171451 NA non-coding upstream 300810 743066 ~ 743771 (-)
G171530 NA non-coding upstream 521741 963997 ~ 964217 (-)
G171531 NA non-coding upstream 523583 965839 ~ 966103 (-)
G171229 NA other downstream 174041 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 629357 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 869273 1311529 ~ 1312780 (-)
G171755 NA other upstream 1421862 1864118 ~ 1866373 (-)
G171835 NA other upstream 1999565 2441821 ~ 2446293 (-)

Expression


Co-expression Network