G169172


Basic Information

Item Value
gene id G169172
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 555187 ~ 556623 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192182
TTTATTGTGTTATTTAAAATCAGCAAAAAAAATTGCTAGACATCCATACAGTACATTAACATAAAGCACCACTGAGATGTTAATATACAAACCAAACCCTTTTTAAAATCACAGTCAAGTATGTTATTTATAGCACCTGATGTGTTCAAAATACAAATAATTATTAGCACCTGATTCCTTTGGTAACAATTGTGTTTTTTTATTATTCAGCACCATTTCTTTACTTGTTATCTCAGATGTTATATCACTACATTCCTGAGATCCGGATTCTGCAGTCCAGGCCGAAGCCGGATTAAGATACAAAACCAACAACCAGCTTGTATTGAAGTCTCTTTTAAGTCATTGGTTGGGGCAGAGATCTGTACCTTGTGGTTTCAGATCATTTAATCTTGCTCTCCCTCTCTATATTTCTATCATCTAAGTCTCTCTCAAGTGGATTCTTGCTACTGAAAAAGGAAAGCCACATACATCCTGTTTAACATAAAAAAAAAGCCCCCCTCCTTCCAATAAACAGAGCCATACACCACCACACACACTCAAAGCAGACATTCTCAGGGCTCTTGGCCCATTTAAAACTGGCAAATGACGTGTTTTTGATGACATATTCTTGAAATACAGTACTGTTCAAAAGTTTGGGGTCAGTAAGATTTTTGTTTTCAAAGAAACTAATTTCTTTATTCAGCGAGAATGCATTAAATTAAATTGATCAAAAGTGACATTAAAGATATTTATAATGTTACAAAAGATTTCTATTTCGAATAAATGCTGTTCTTTTGAACTTTCTATTCATCTAAGAATCCTGAAAAAAGAAGTGTCACGTTTCCACAAAACAGCTTTGACCACATGAGTACATTACATTTTAAAATATATTTAAATAGAAACAGCTATTTAAAGTTGTAATAATATTTCACAATATGTCAGTTTTTGAGAAAAGAGACCTCTTTCATAAAACTCTAAAAATCTTAACAACCTCAGATTTTTAAACAGTAGTGTATATTAAACTTTTTTTCTTTTTTTTCCAAAAACCCTGACCAGGTGTGTATTTCCCGTACAACGACATAACTCGCTGCTTCACTACCATAGTACGATGCATTGTTGAACAAATCAACTAGCTAGTCACAACTGTTTCCCAAAACCGCATTGTCACAAACCTGTCGTTCAGCCACGGTGGTGAATGATGTCACGCAGGTGGTGAGTAATAACTTCTTTAAATGAATCCGTTTGAGATCGAATTAATGCTAGATATTTTGCTATAAATATATATAATATACATGGCATCTGATTACTAATTCTCATTTTTCTCATTTATTTTGCTTTATTTCCAGATTCAATAATAGGCTCGTTCTTACGTACCAGAGCACGTACGCACATGCGCACTCTTCAAAAACGGTGCTTAAAGGATTAGTTCACTTTAAAATGAAAATTACCCCAAGCTTT
>TU192185
TTTATTGTGTTATTTAAAATCAGCAAAAAAAATTGCTAGACATCCATACAGTACATTAACATAAAGCACCACTGAGATGTTAATATACAAACCAAACCCTTTTTAAAATCACAGTCAAGTATGTTATTTATAGCACCTGATGTGTTCAAAATACAAATAATTATTAGCACCTGATTCCTTTGGTAACAATTGTGTTTTTTTATTATTCAGCACCATTTCTTTACTTGTTATCTCAGATGTTATATCACTACATTCCTGAGATCCGGATTCTGCAGTCCAGGCCGAAGCCGGATTAAGATACAAAACCAACAACCAGCTTGTATTGAAGTCTCTTTTAAGTCATTGGTTGGGGCAGAGATCTGTACCTTGTGGTTTCAGATCATTTAATCTTGCTCTCCCTCTCTATATTTCTATCATCTAAGTCTCTCTCAAGTGGATTCTTGCTACTGAAAAAGGAAAGCCACATACATCCTGTTTAACATAAAAAAAAAGCCCCCCTCCTTCCAATAAACAGAGCCATACACCACCACACACACTCAAAGCAGACATTCTCAGGGCTCTTGGCCCATTTAAAACTGGCAAATGACGTGTTTTTGATGACATATTCTTGAAATACAGTACTGTTCAAAAGTTTGGGGTCAGTAAGATTTTTGTTTTCAAAGAAACTAATTTCTTTATTCAGCGAGAATGCATTAAATTAAATTGATCAAAAGTGACATTAAA
>TU192186
TTTATTGTGTTATTTAAAATCAGCAAAAAAAATTGCTAGACATCCATACAGTACATTAACATAAAGCACCACTGAGATGTTAATATACAAACCAAACCCTTTTTAAAATCACAGTCAAGTATGTTATTTATAGCACCTGATGTGTTCAAAATACAAATAATTATTAGCACCTGATTCCTTTGGTAACAATTGTGTTTTTTTATTATTCAGCACCATTTCTTTACTTGTTATCTCAGATGTTATATCACTACATTCCTGAGATCCGGATTCTGCAGTCCAGGCCGAAGCCGGATTAAGATACAAAACCAACAACCAGCTTGTATTGAAGTCTCTTTTAAGTCATTGGTTGGGGCAGAGATCTGTACCTTGTGGTTTCAGATCATTTAATCTTGCTCTCCCTCTCTATATTTCTATCATCTAAGTCTCTCTCAAGTGGATTCTTGCTACTGAAAAAGGAAAGCCACATACATCCTGTTTAACATAAAAAAAAAGCCCCCCTCCTTCCAATAAACAGAGCCATACACCACCACACACACTCAAAGCAGACATTCTCAGGGCTCTTGGCCCATT
>TU192184
GAGATGTTAATATACAAACCAAACCCTTTTTAAAATCACAGTCAAGTATGTTATTTATAGCACCTGATGTGTTCAAAATACAAATAATTATTAGCACCTGATTCCTTTGGTAACAATTGTGTTTTTTTATTATTCAGCACCATTTCTTTACTTGTTATCTCAGATGTTATATCACTACATTCCTGAGATCCGGATTCTGCAGTCCAGGCCGAAGCCGGATTAAGATACAAAACCAACAACCAGCTTGTATTGAAGTCTCTTTTAAGTCATTGGTTGGGGCAGAGATCTGTACCTTGTGGTTTCAGATCATTTAATCTTGCTCTCCCTCTCTATATTTCTATCATCTAAGTCTCTCTCAAGTGGATTCTTGCTACTGAAAAAGGAAAGCCACATACATCCTGTTTAACATAAAAAAAAAGCCCCCCTCCTTCCAATAAACAGAGCCATACACCACCACACACACTCAAAGCAGACATTCTCAGGGCTCTTGGCCCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192182 False 1437 lncRNA 0.34 1 555187 556623
TU192185 False 723 lncRNA 0.35 1 555187 555909
TU192186 False 570 lncRNA 0.36 1 555187 555756
TU192184 True 497 lncRNA 0.38 1 555260 555756

Neighbor

gene id symbol gene type direction distance location
CI01000034_00545816_00547683 NA coding upstream 6673 545816 ~ 548514 (+)
CI01000034_00520790_00525323 DDX5 coding upstream 29614 520672 ~ 525573 (+)
CI01000034_00486238_00516732 SMURF2 coding upstream 37663 486238 ~ 517524 (+)
CI01000034_00455762_00459788 KPNA2, IMA2 coding upstream 95260 455145 ~ 459927 (+)
CI01000034_00422322_00453621 BPTF coding upstream 101543 421475 ~ 453644 (+)
CI01000034_00615867_00624387 MIEF1 coding downstream 58335 614958 ~ 625820 (+)
CI01000034_00637189_00642362 NA coding downstream 80347 636970 ~ 642439 (+)
CI01000034_00643011_00645310 RBX1 coding downstream 86278 642901 ~ 645310 (+)
CI01000034_00661553_00677752 XPP3, XPNPEP3 coding downstream 104930 661553 ~ 679148 (+)
CI01000034_00683973_00725610 EP300, EP300B coding downstream 127350 683973 ~ 725905 (+)
G169170 NA non-coding upstream 1984 552935 ~ 553203 (+)
G169117 NA non-coding upstream 358439 196392 ~ 196748 (+)
G169052 NA non-coding upstream 453147 101049 ~ 102040 (+)
G169087 NA non-coding upstream 483221 66609 ~ 71966 (+)
G169083 NA non-coding upstream 510551 44301 ~ 44636 (+)
G169173 NA non-coding downstream 105 556728 ~ 556959 (+)
G169174 NA non-coding downstream 484 557107 ~ 559241 (+)
G169220 NA non-coding downstream 31280 587903 ~ 588144 (+)
G169221 NA non-coding downstream 33231 589854 ~ 590199 (+)
G169309 NA other downstream 412638 969261 ~ 969921 (+)
G169357 NA other downstream 546917 1053543 ~ 1119019 (+)
G169394 NA other downstream 593674 1150297 ~ 1193560 (+)
G169340 NA other downstream 693596 1250219 ~ 1310878 (+)

Expression


Co-expression Network