Gene
RNA
| Item | Value |
|---|---|
| gene id | G171530 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 963997 ~ 964217 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU194863 | True | 221 | lncRNA | 0.29 | 1 | 963997 | 964217 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_00956861_00961594 | NA | coding | downstream | 2403 | 956544 ~ 961594 (-) |
| CI01000034_00934363_00941644 | SLC25A17 | coding | downstream | 22353 | 932793 ~ 941644 (-) |
| CI01000034_00881526_00896469 | MKL1 | coding | downstream | 67528 | 881202 ~ 896469 (-) |
| CI01000034_00728121_00732221 | NA | coding | downstream | 231776 | 727438 ~ 732221 (-) |
| CI01000034_00648618_00659733 | ST13 | coding | downstream | 304264 | 647886 ~ 659733 (-) |
| CI01000034_00976338_00983692 | NA | coding | upstream | 11928 | 976145 ~ 984275 (-) |
| CI01000034_00984505_00989012 | NA | coding | upstream | 20202 | 984419 ~ 989885 (-) |
| CI01000034_00994278_01019787 | NA | coding | upstream | 29281 | 993498 ~ 1019864 (-) |
| CI01000034_01021753_01050726 | NA | coding | upstream | 55905 | 1020122 ~ 1053355 (-) |
| CI01000034_01062505_01083413 | NA | coding | upstream | 98227 | 1062444 ~ 1083413 (-) |
| G171451 | NA | non-coding | downstream | 220226 | 743066 ~ 743771 (-) |
| G171382 | NA | non-coding | downstream | 410318 | 553304 ~ 553679 (-) |
| G171356 | NA | non-coding | downstream | 495289 | 465412 ~ 468708 (-) |
| G171309 | NA | non-coding | downstream | 521741 | 441287 ~ 442256 (-) |
| G171341 | NA | non-coding | downstream | 550960 | 412672 ~ 413037 (-) |
| G171531 | NA | non-coding | upstream | 1622 | 965839 ~ 966103 (-) |
| G171404 | NA | non-coding | upstream | 114145 | 1078362 ~ 1080996 (-) |
| G171549 | NA | non-coding | upstream | 158200 | 1122417 ~ 1122719 (-) |
| G171405 | NA | non-coding | upstream | 162268 | 1126485 ~ 1127643 (-) |
| G171572 | NA | non-coding | upstream | 233761 | 1197978 ~ 1198270 (-) |
| CI01000034_00571856_00577732 | NA | other | downstream | 379714 | 571856 ~ 577775 (-) |
| G171229 | NA | other | downstream | 696751 | 229404 ~ 267246 (-) |
| CI01000034_01312431_01312780 | PRR15LA | other | upstream | 347312 | 1311529 ~ 1312780 (-) |
| G171755 | NA | other | upstream | 899901 | 1864118 ~ 1866373 (-) |
| G171835 | NA | other | upstream | 1477604 | 2441821 ~ 2446293 (-) |
| CI01000034_02510595_02511512 | NA | other | upstream | 1545596 | 2510061 ~ 2511521 (-) |
