G169302


Basic Information

Item Value
gene id G169302
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 993160 ~ 1021824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192330
ACAGGGAAATAACCCAATTTATTAATAAAGTCACGTAAACGCGGTTTATTGCATTGTCAGTTTACTGGTTTGCATGTAAATGGGGAAAACTGGTTATTTCAATATATACATGTATTTCATGCTCACCTGAACAGTTTTAAAGGCTTATAAAAGATTATAAACTTCCATTGTGATAGAAGTTTATACACATTTATAATTGCAATTTAGTACATTTAAAACTGAAGCAATATTTGCTTCTTGGACTGTTTGTTTTGGCATAAAACAATGGAAAGAGAAATATTCAATAAAAGGATATCATATTTTGCTTACCCAAACATTTCATTATGAGTGGTTATTTGTTTAATTAGTATACACAATATGTTATTTGTTCTCACCTGTCATCTTACAGTAGGTCAATATCTGCATTTTGAGCACTTAAAGACTATTACTATTATACTTGACATTACTATTATACTTGAATTTTCAAATATTTCTGTCCACATTTTTAACAGAATGGTATCAGAAAAATTATATTAGAATGGTATCAAAAAAATTGTATCAAAAAAAAAATAAAATAAATCAAGTCCGCAGAATAAAAAATGTTATTTTTAAACAATGTGTAAAAAAATATATGAATTGTAAACATGTTCATTTAGATTCAACTGTCAAGTGTGTACATTTTTCGATTTTGAAATTCATTTTCCTATTCCAGCTTAATATGTAGAGTCAACTATAAATAAAGCATTTTAGGTTCATTTCCAAAAGAGTTCAAATGGCCGTCACTGAAGTACTTTTAAAACAGTACAGTGTTTATTTGAGTGGTCAAACAACTTCAACCAATACTGTGAATTTGGAGCAGGGCTGTGGATTACATTTTCTATTGTATGAACAATAGAAAATGTAATGACTGTTTAGGAAACCCACTTGACTGTTCAGGAAACCTACTTTGTGCTAAGGGCACAAAAAATGACACACTTCACCTTTAAGGTACATTGACACGAACAGGCTAAATGACTGGAGGTTGACCATGGTTGCTGTCATTCAAATACTGTCAGTTATTAAAATGAATGTCCTCTTGTTGTTTTAAATATAAAAACCCAATAGTAACTTCTGTATTGACATATTGACATAATCAACCCACAGCATGACGTTATAGGAGATTAAAGACAGTTTTAAACTTCTTCTTGAATGCTTCCTTCAGCCTAGAGTTCATTTTACTGGA
>TU192331
ACAGGGAAATAACCCAATTTATTAATAAAGTCACGTAAACGCGGTTTATTGCATTGTCAGTTTACTGGTTTGCATGTAAATGGGGAAAACTGGTTATTTCAATATATACATGTATTTCATGCTCACCTGAACAGTTTTAAAGGCTTATAAAAGATTATAAACTTCCATTGTGATAGAAGTTTATACACATTTATAATTGCAATTTAGTACATTTAAAACTGAAGCAATATTTGCTTCTTGGACTGTTTGTTTTGGCATAAAACAATGGAAAGAGAAATATTCAATAAAAGGATATCATATTTTGCTTACCCAAACATTTCATTATGAGTGGTTATTTGTTTAATTAGTATACACAATATGTTATTTGTTCTCACCTGTCATCTTACAGTAGGTCAATATCTGCATTTTGAGCACTTAAAGACTATTACTATTATACTTGACATTACTATTATACTTGAATTTTCAAATATTTCTGTCCACATTTTTAACAGAATGGTATCAGAAAAATTATATTAGAATGGTATCAAAAAAATTGTATCAAAAAAAAAATAAAATAAATCAAGTCCGCAGAATAAAAAATGTTATTTTTAAACAATGTGTAAAAAAATATATGAATTGTAAACATGTTCATTTAGATTCAACTGTCAAGTGTGTACATTTTTCGATTTTGAAATTCATTTTCCTATTCCAGCTTAATATGTAGAGTCAACTATAAATAAAGCATTTTAGGTTCATTTCCAAAAGAGTTCAAATGGCCGTCATTGAAGTACTTTTAAAACAGTACAGTGTTTATTTGAGTGGTCAAACAACTTCAAAAAATACTGTGAATTTGGAGCAGGGCTGTGGATTACATTTTCGATTGTATGAACAATAGAAAATGTAATGACTATTTAGGAAACCCACTTGACTGTTTAGGAAACCTACTTTGTGCTAAGGGCACAAAAAATGACACACTTCACCTTCAAGGTACACTGACATGGACAGGCTAAATGACTGGAGGTTGACCATGGTTGCTGTCATTCAAATACTGTCAGTTATTAAAATGAATGTCCTCTTGTTGTTTTAAATATAAAAACCCAATAGTAACTTCTGTATTGACATATTGACATAATCAACCCACAGCATGACGTTATAGGAGATTAAAGACAGTTTTAAACTTCTTCTTGAATGCTTCCTTCAGCCTAGAGTTCATTTTACTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192330 False 1201 lncRNA 0.30 2 993160 1021824
TU192331 True 1201 lncRNA 0.30 2 993160 1021824

Neighbor

gene id symbol gene type direction distance location
CI01000034_00951238_00955839 NA coding upstream 37073 950467 ~ 956087 (+)
CI01000034_00943362_00945523 NA coding upstream 47529 943362 ~ 945631 (+)
CI01000034_00860887_00862727 NA coding upstream 130259 860887 ~ 862901 (+)
CI01000034_00821815_00825192 NA coding upstream 167955 820595 ~ 825205 (+)
CI01000034_00785411_00801907 NA coding upstream 191101 784545 ~ 803844 (+)
CI01000034_01124686_01125224 NA coding downstream 102862 1124686 ~ 1126197 (+)
CI01000034_01139725_01146104 BAIAP2L2A coding downstream 117901 1139725 ~ 1146324 (+)
CI01000034_01210160_01223724 NA coding downstream 188336 1210160 ~ 1223869 (+)
CI01000034_01305634_01306636 NA coding downstream 283810 1305634 ~ 1306844 (+)
CI01000034_01383935_01395565 NA coding downstream 361767 1383591 ~ 1396448 (+)
G169312 NA non-coding upstream 10951 979511 ~ 982209 (+)
G169308 NA non-coding upstream 27056 965853 ~ 966104 (+)
G169275 NA non-coding upstream 80873 912001 ~ 912287 (+)
G169262 NA non-coding upstream 82273 893619 ~ 910887 (+)
G169260 NA non-coding upstream 116107 876810 ~ 877053 (+)
G169357 NA non-coding downstream 31719 1053543 ~ 1119019 (+)
G169300 NA non-coding downstream 40431 1062255 ~ 1062988 (+)
G169366 NA non-coding downstream 50336 1072160 ~ 1073203 (+)
G169368 NA non-coding downstream 52896 1074720 ~ 1075808 (+)
G169365 NA non-coding downstream 56511 1078335 ~ 1080864 (+)
G169309 NA other upstream 23239 969261 ~ 969921 (+)
CI01000034_00643011_00645310 RBX1 other upstream 346750 642901 ~ 645310 (+)
G169394 NA other downstream 128473 1150297 ~ 1193560 (+)
G169340 NA other downstream 228395 1250219 ~ 1310878 (+)
CI01000034_01729413_01730790 EVE1 other downstream 704686 1729413 ~ 1731179 (+)
G169806 NA other downstream 1296149 2317973 ~ 2337690 (+)

Expression


Co-expression Network