Gene
RNA
| Item | Value |
|---|---|
| gene id | G169351 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 1082703 ~ 1083262 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU192389 | True | 482 | lncRNA | 0.47 | 2 | 1082703 | 1083262 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_00951238_00955839 | NA | coding | upstream | 126616 | 950467 ~ 956087 (+) |
| CI01000034_00943362_00945523 | NA | coding | upstream | 137072 | 943362 ~ 945631 (+) |
| CI01000034_00860887_00862727 | NA | coding | upstream | 219802 | 860887 ~ 862901 (+) |
| CI01000034_00821815_00825192 | NA | coding | upstream | 257498 | 820595 ~ 825205 (+) |
| CI01000034_00785411_00801907 | NA | coding | upstream | 280644 | 784545 ~ 803844 (+) |
| CI01000034_01124686_01125224 | NA | coding | downstream | 41424 | 1124686 ~ 1126197 (+) |
| CI01000034_01139725_01146104 | BAIAP2L2A | coding | downstream | 56463 | 1139725 ~ 1146324 (+) |
| CI01000034_01210160_01223724 | NA | coding | downstream | 126898 | 1210160 ~ 1223869 (+) |
| CI01000034_01305634_01306636 | NA | coding | downstream | 222372 | 1305634 ~ 1306844 (+) |
| CI01000034_01383935_01395565 | NA | coding | downstream | 300329 | 1383591 ~ 1396448 (+) |
| G169365 | NA | non-coding | upstream | 1839 | 1078335 ~ 1080864 (+) |
| G169368 | NA | non-coding | upstream | 6895 | 1074720 ~ 1075808 (+) |
| G169366 | NA | non-coding | upstream | 9500 | 1072160 ~ 1073203 (+) |
| G169300 | NA | non-coding | upstream | 19715 | 1062255 ~ 1062988 (+) |
| G169302 | NA | non-coding | upstream | 60879 | 993160 ~ 1021824 (+) |
| G169352 | NA | non-coding | downstream | 4157 | 1087419 ~ 1090273 (+) |
| G169392 | NA | non-coding | downstream | 43194 | 1126456 ~ 1127644 (+) |
| G169391 | NA | non-coding | downstream | 44487 | 1127749 ~ 1132468 (+) |
| G169417 | NA | non-coding | downstream | 149625 | 1232887 ~ 1233089 (+) |
| G169309 | NA | other | upstream | 112782 | 969261 ~ 969921 (+) |
| CI01000034_00643011_00645310 | RBX1 | other | upstream | 436293 | 642901 ~ 645310 (+) |
| G169357 | NA | other | downstream | 20278 | 1053543 ~ 1119019 (+) |
| G169394 | NA | other | downstream | 67035 | 1150297 ~ 1193560 (+) |
| G169340 | NA | other | downstream | 166957 | 1250219 ~ 1310878 (+) |
| CI01000034_01729413_01730790 | EVE1 | other | downstream | 643248 | 1729413 ~ 1731179 (+) |
| G169806 | NA | other | downstream | 1234711 | 2317973 ~ 2337690 (+) |
