G169352


Basic Information

Item Value
gene id G169352
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1087419 ~ 1090273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192390
GAAACAATACTATTATTGTACCATGTCCAAAAAGCATGCTATTGCCATACATGACCAAAAATGATCATGTCCACAAAACCATGGTACTGGAGCGTTTTGCTAGTGCTAGCAATAACATGAATGACTATAAAAGAGATACTTCCAGCCTTTAATGCATGGGTGTGTTAGAGAAGGAGTGTATGTAGGGTGGGCGTGTTCCTGCCTCAAAGACTTTCTCCGTCATCAGGTCGTGATCGCGCAGCTGAGTGAGAAATGCGTGCGGTTGTTCTATGCACGAAATCTCTGTCTTCTTTCGGCGAAGAAAAAGTAGCAACTGTTCATTCGTTAGAAAGTCTAACGGGTCCATTTGGCCGCTGACTCCCATTAATTCACAGATCTGTCGACGGCCGAGCTGTCACGAGGGATTTGTATATTTCTGTACTTAACACGAGCAGGTCAGAAACAGAAACAGTTGTTTCCAAATCTCCCGCCTGTATGGGACAATCTGGCTCATAAACCTTACAGTATGCGGAAGTGATGTAGGGAAAGCGAACGTTAAACCCGTTCAAAGTTCAAAACGCAGGAATGGACGTTCGACACAGTTCAGATAATCGGTTCTTTCGAACAGAATCTTTTGTTCATAAAACAACGCCAAGGCGTGTATATTTGGTTATTAATAAGGATGTTCATATAATTTCATGCGTCACAGTTCTGTTAACTACATATGCGAACGATAACATTAATTTTCACTTGGATGGAAAAAAAAGTTTTTGCACAAATCTTATTAAAACTAAACATGGTTTTATCAACCACATCTGTTGATATACTAACTGTAATACAAATTTCCAGTGCATTTTATTTATAACATTTCTGCTATATGTTATTCAGGTCATTTTTCATTAAACTTTTTTTTTTGCCCCTTCAGCCATATCCTCAAATTCTTTGTTTCGATTCAAAAGAACGACTCGTTCACGAATCAGACATCACTCCAGACCAGGGTTGCGTAGCGTTTCCCAAAAGCGTCGTAAGCTTAAGTAAATCGTAGAGCCAAACAGCCTAAACTGTTCGAGAATAAGGCATATCGTACAAAGCATCCTAGAGAAAGAATATATGATCGCACTGGTCTGGATAACGTGATTAAAATATTTAAATGACCCTACCTGTGATACTATTGACCTGTCGGGCAGGTCAATAGTAAGGAGGGGCCCGAAGCAATGCACACGACAACCAGAATCTTGCCTGAGGCTTCCTGCACTGAATGGGTCACCTGCAAATTAATGATAAAAGCTCTCAAATATTAGTAGTGATTACCCTTTACAGTAGCCTAGATGATTCAACATCATCGTGTACATGTAAAACTCACACCTAATTGTGACTTAATCACTAGATGTACATTATTAATCGTCTAACTGAACTTCTTCCTAACAGTTTTAGTTTTTGAAGCGTCTGTGCTGATAGGAACTTGCTTTTTGTCCACCAGAGGGCGCAAATTATCAAGAATAGAAATGTTTCCAAATACACAGTGAGTTATTGGTAAAAATAAAGCTTGAAAAATGTAGGCTTATAGAAATAAGCGAACTCCTAGTTAGTTTCTCTTATTATTGTTATCAGTTGTGTAGGCTACATTGAAGTGTTTATGTTGCATATTATGTTGTTTAGTTAATGTTTACTGCATTATTTTGGCGTCATTACCTCGATGGTGTTTAACACTGTAGTGTTGCTGTAGAAGTTATTTTTTTTGCTAACTTTTAAGTCATGTTTCCTTCACTTGTACCTACTACGTGTGTTATTATCAGTACATTTTATAACAACACAATAGCTCAAATAGGTCGGTAGCCTATATTAACCTCATGATTTAATAAGAGCCGTAAAATAAAGTCATAAAACTCCCATCCTGTAATGCTTGAGAGTTTTTATACAAAATTATACCTACATTATTTTGTAGGCAAACCCCTGCATCCCAGGAAGTCAATATTTCCTTTTAACAACACACAACCTTTACTTGTTCATCTCTTTTCATTGAACCCAGAAGGCTGTTTTGGAGAATGACAAACTAAAATATTAAAAATGAAGCAGAGAAAAGTGGCACATCTGAGTCACTGTCAGTCTCCACAGTGTGTTGTTATGTGTGGTGAAGGAGTAGTTACTCACCCTCGTGTCTTTCCAAACCTGCATGAGTTCTTTCTTCTAACACAAAAGAAGAATTCTATGAAGAAGAGTGCAATTATAAAGAAGCCCAAAATACTTTCCGTTAAACTGAAATTGCCTCAGGAACTTTGAACTCACATGAAACAACAACACATGTCAACATGAAAACATTTGTCTCCACAGATGTGAAGATGTGTCCTTTCCCACTCCCTTCAGCTTTAACTCAGAATAGTTAAATGGAAAATACAATGTTCTGTGTGATTTTTCACGTTTGAAACGTCTCAGAAAGATTGGTACAAATGTCAAATCCCAATAAGTAGACTAAATTATAATAAAGAGGAGGTAAGACTTTAATAACAATTACCTTCTGTCCCACAATAAGGTGTAAAGCTCTTTATCTGGGATCATTTTTAATGCAAATTCCAAAAATTAGTTCATGTCTCCATTTGGAGAATCTTGGTCTGAGTAGCTCAGATAAAGTTTACCCAAGACTGTGATCACCCTCATGTCATTCCAATCCTGTATGCCTTTCTTTCTT

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 56 isoform X3

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192390 True 2665 lncRNA 0.37 2 1087419 1090273

Neighbor

gene id symbol gene type direction distance location
CI01000034_00951238_00955839 NA coding upstream 131332 950467 ~ 956087 (+)
CI01000034_00943362_00945523 NA coding upstream 141788 943362 ~ 945631 (+)
CI01000034_00860887_00862727 NA coding upstream 224518 860887 ~ 862901 (+)
CI01000034_00821815_00825192 NA coding upstream 262214 820595 ~ 825205 (+)
CI01000034_00785411_00801907 NA coding upstream 285360 784545 ~ 803844 (+)
CI01000034_01124686_01125224 NA coding downstream 34413 1124686 ~ 1126197 (+)
CI01000034_01139725_01146104 BAIAP2L2A coding downstream 49452 1139725 ~ 1146324 (+)
CI01000034_01210160_01223724 NA coding downstream 119887 1210160 ~ 1223869 (+)
CI01000034_01305634_01306636 NA coding downstream 215361 1305634 ~ 1306844 (+)
CI01000034_01383935_01395565 NA coding downstream 293318 1383591 ~ 1396448 (+)
G169351 NA non-coding upstream 4157 1082703 ~ 1083262 (+)
G169365 NA non-coding upstream 6555 1078335 ~ 1080864 (+)
G169368 NA non-coding upstream 11611 1074720 ~ 1075808 (+)
G169366 NA non-coding upstream 14216 1072160 ~ 1073203 (+)
G169300 NA non-coding upstream 24431 1062255 ~ 1062988 (+)
G169392 NA non-coding downstream 36183 1126456 ~ 1127644 (+)
G169391 NA non-coding downstream 37476 1127749 ~ 1132468 (+)
G169417 NA non-coding downstream 142614 1232887 ~ 1233089 (+)
G169422 NA non-coding downstream 157874 1248147 ~ 1248372 (+)
G169309 NA other upstream 117498 969261 ~ 969921 (+)
CI01000034_00643011_00645310 RBX1 other upstream 441009 642901 ~ 645310 (+)
G169357 NA other downstream 13267 1053543 ~ 1119019 (+)
G169394 NA other downstream 60024 1150297 ~ 1193560 (+)
G169340 NA other downstream 159946 1250219 ~ 1310878 (+)
CI01000034_01729413_01730790 EVE1 other downstream 636237 1729413 ~ 1731179 (+)
G169806 NA other downstream 1227700 2317973 ~ 2337690 (+)

Expression


Co-expression Network