Gene
RNA
| Item | Value |
|---|---|
| gene id | G169392 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 1126456 ~ 1127644 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| peroxisome proliferator-activated receptor alpha, partial |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU192445 | False | 1189 | lncRNA | 0.35 | 1 | 1126456 | 1127644 |
| TU192444 | False | 1158 | lncRNA | 0.35 | 1 | 1126487 | 1127644 |
| TU192443 | False | 778 | lncRNA | 0.37 | 1 | 1126867 | 1127644 |
| TU192446 | True | 531 | lncRNA | 0.41 | 1 | 1126867 | 1127397 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_01124686_01125224 | NA | coding | upstream | 259 | 1124686 ~ 1126197 (+) |
| CI01000034_00951238_00955839 | NA | coding | upstream | 170369 | 950467 ~ 956087 (+) |
| CI01000034_00943362_00945523 | NA | coding | upstream | 180825 | 943362 ~ 945631 (+) |
| CI01000034_00860887_00862727 | NA | coding | upstream | 263555 | 860887 ~ 862901 (+) |
| CI01000034_00821815_00825192 | NA | coding | upstream | 301251 | 820595 ~ 825205 (+) |
| CI01000034_01139725_01146104 | BAIAP2L2A | coding | downstream | 12081 | 1139725 ~ 1146324 (+) |
| CI01000034_01210160_01223724 | NA | coding | downstream | 82516 | 1210160 ~ 1223869 (+) |
| CI01000034_01305634_01306636 | NA | coding | downstream | 177990 | 1305634 ~ 1306844 (+) |
| CI01000034_01383935_01395565 | NA | coding | downstream | 255947 | 1383591 ~ 1396448 (+) |
| CI01000034_01632580_01633233 | NA | coding | downstream | 504358 | 1632002 ~ 1633525 (+) |
| G169357 | NA | non-coding | upstream | 7437 | 1053543 ~ 1119019 (+) |
| G169352 | NA | non-coding | upstream | 36183 | 1087419 ~ 1090273 (+) |
| G169351 | NA | non-coding | upstream | 43194 | 1082703 ~ 1083262 (+) |
| G169365 | NA | non-coding | upstream | 45592 | 1078335 ~ 1080864 (+) |
| G169391 | NA | non-coding | downstream | 105 | 1127749 ~ 1132468 (+) |
| G169417 | NA | non-coding | downstream | 105243 | 1232887 ~ 1233089 (+) |
| G169422 | NA | non-coding | downstream | 120503 | 1248147 ~ 1248372 (+) |
| G169435 | NA | non-coding | downstream | 166525 | 1294169 ~ 1302067 (+) |
| G169434 | NA | non-coding | downstream | 167947 | 1295591 ~ 1296004 (+) |
| G169309 | NA | other | upstream | 156535 | 969261 ~ 969921 (+) |
| CI01000034_00643011_00645310 | RBX1 | other | upstream | 480046 | 642901 ~ 645310 (+) |
| G169394 | NA | other | downstream | 22653 | 1150297 ~ 1193560 (+) |
| G169340 | NA | other | downstream | 122575 | 1250219 ~ 1310878 (+) |
| CI01000034_01729413_01730790 | EVE1 | other | downstream | 598866 | 1729413 ~ 1731179 (+) |
| G169806 | NA | other | downstream | 1190329 | 2317973 ~ 2337690 (+) |
| CI01000034_03432846_03437608 | NDUFA4, NDUFA4L | other | downstream | 2306492 | 3432846 ~ 3438839 (+) |
