G171743


Basic Information

Item Value
gene id G171743
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1950142 ~ 1952366 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195105
TGATCCATTCATAGACTCTTAAGTATTTGCCTATTAAAATCCAAACAGCAACTTTTTCTTTTTTTTTGGCCGGGCAGTGTAGGACAGACTACAACAAAATAGAGCTTTGGTGATAACAGAAAATTACAATACTAATTTTCTTGAATGGAACACACAGGATTTTGATATATCATAGGCAGTGAAGGATACATCTATGCTGCCTTCAAAAATCGATCAGCTGAAGGGATCAGTCAGGATGTGACGATCAGTGGATTAGGACGTGCCTTGTTGACTTCTTACCTCCGTGTATTTTTCGGCTTTCGGACGCAGCGCCTTACCGAAGAACGTCTTCTGTGTGAACACAGCCCTTAAAAATCAATCAATTACCGGAGTGCTGTGAAGCGCAGATTATAGTTTGGTCGGATAGCTGTGGCCTGTTCTCTTCACTGTTGGGCCTCTCACATCAACCATATAAAATGAAAGAGAATCGAGTTTGTTTTTCAAATGTCGGAAAACTCAGCGCAGTATTGAAACCCCTCAGGAGTAGCTATTGGATTCTTCCATTCCCCCCGCCCCCCGAAAGTATTTACGTGTTTAGCTTTTTATGTGATTGTTTATTTTCATATAGTTTTAATACATTTTTTAAATATTACAAGTCATTTTACATTGGTTAAAAATGATGAGCATCAGGATAACACTGAGAATACAAAGGACAAAGTTTTGCAAAACGATGCAACGAACATAGCCTATTCTAGAAATCTTAAAGTCATTGATATTCCGCAGCTAAGTCTAAAATATTTTGTACGTCAATCATCCTAAAACGAAATAAGATGAGTTTATGTCTGACTTTCGTTGTCAATAGTCACCTAAAACAATTTTTAAAGCAAGCGAGGACAAGCACTGACTGGAAACGATATTTCTCGCTTGATTAATTATGGGACTTTTATCTGAGTTTCACTGCTCTTAATTCGTTGACTGTTTAACCCTGACTAGAAACTTCAGTGTTATCTCGCAACCAAGTGCAGAACATATTTGAGGAATTGAATTGAAAGGATTACACAATGATTGATAAATGTATATAGATCTCAAAAATAGACCCATTTTGAGGGCTTTTTTCTTTTATTTGCACAATGTCAAGGAAACCGTGATTTCCCATCCGTAAGGAAGCCCGCTGGGTTGACAAGGACCTAGGATATTCTAACAAAACGGTCATATTTGCTGTGTACAGTTCTGTTTACTGTGAGCCTCTTTTGCTGGGATTTATTATTGTAATGTGCTGGCTAGTACACGATGAGCTTATGTGTATGGATGTCCAGACGGTGGCACAATTCAGTTGAGACATGGAAACATTTATTTTCCCCTTGCTTTACACTGTAGAAATGAGCAAACTGAGTTATGAAGGAAATGGTCGACTTTGAATCTTATTAACGCTTTTAAATTTCACACTTTAGCCTAGCTTAGCTTAGCTTAGCTGCTGCCTTTAATGAAAGGAATTTGCTTCCATGTACAGGAAAGAGCTCTGTGTTTCTCTCCTCAATTGCTGGTGTAATAGTTGGTTCCTCTTTATTTTCGGTGTCTACAGTGTATTTAAATCGAAATCTAATGAGTACAGAATAACATGTTTAAAGATGTGGTGTCGTTAAACATGCATCAACTTGGAACTATATTGGAGGGGGGAAAAATGCAACAACATGTAATTTGATTGTAATTTTCATAATTATGACATTAGCACATTTGTCTGACACCTAACATAAAGCAGGAACGCCATTGATTTTTATAGTTGTTTTACGAACTCGACTCCATTTTCTCTGTACTGTTTTATTTCCTTTTTACCCCTGCCATGTAAATTGCTACCACATGAACAAGAGGAAGATGTTCTCCATTTGAAATAAGCGTCATCATGTTCAATAATTGCATAAGTACTGTCATAATAAAATGCAGAAATGTGCTGAGCAACAGCAAATTTTGTCTGTTTTGAAAGTCAGTGTGCGAAGAGGCTTGACATTGTTGAGTAGGTGATTTTCTCTATGACGTTTTGTGGAGTTGAAATGTGTTATTTATTTGACATGTTAGTATCACCAAGCAATATGTCTGGTTCCTACAAACATACAGAAGACCACAGGGGCCGTGCATTATTATTTTTCTGTCCATGATAAAAAATAAGACAGGAAAAGAATAATGTGGCTATGTTTGGAATGTCATTATTTCTGCTAGGCCTATTCCATTTGGGGCCGTAACAACTAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195105 True 2225 lncRNA 0.37 1 1950142 1952366

Neighbor

gene id symbol gene type direction distance location
CI01000034_01842093_01847705 NR1D1 coding downstream 102437 1840937 ~ 1847705 (-)
CI01000034_01785791_01788743 NA coding downstream 160327 1785235 ~ 1789815 (-)
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding downstream 229896 1718606 ~ 1720246 (-)
CI01000034_01703545_01705527 HOXB10A, HOXD10A, HOXA10 coding downstream 244099 1702892 ~ 1706043 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding downstream 251715 1694041 ~ 1698427 (-)
CI01000034_01957876_01995623 NA coding upstream 5510 1957876 ~ 1995816 (-)
CI01000034_02010544_02026521 NA coding upstream 57776 2010142 ~ 2026725 (-)
CI01000034_02092229_02092596 GNGT2, GNGT2A coding upstream 139593 2091959 ~ 2092642 (-)
CI01000034_02098976_02103261 NA coding upstream 145237 2097603 ~ 2103261 (-)
CI01000034_02110958_02136112 NA coding upstream 158580 2110946 ~ 2136112 (-)
G171759 NA non-coding downstream 89051 1860582 ~ 1861091 (-)
G171785 NA non-coding downstream 94691 1854033 ~ 1855451 (-)
G171751 NA non-coding downstream 119515 1827596 ~ 1830627 (-)
G171731 NA non-coding downstream 169086 1780846 ~ 1781056 (-)
G171724 NA non-coding downstream 182064 1764501 ~ 1768078 (-)
G171748 NA non-coding upstream 92 1952458 ~ 1952778 (-)
G171745 NA non-coding upstream 544 1952910 ~ 1953364 (-)
G171815 NA non-coding upstream 7088 1959454 ~ 1961649 (-)
G171860 NA non-coding upstream 122330 2074696 ~ 2074906 (-)
G171867 NA non-coding upstream 143484 2095850 ~ 2096308 (-)
G171755 NA other downstream 83769 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 631888 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 872920 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1365859 571856 ~ 577775 (-)
G171229 NA other downstream 1682896 229404 ~ 267246 (-)
G171835 NA other upstream 489455 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 557447 2510061 ~ 2511521 (-)
G172016 NA other upstream 1282597 3234963 ~ 3236615 (-)
G172151 NA other upstream 1439147 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 2214133 4165373 ~ 4172272 (-)

Expression


Co-expression Network