Gene
RNA
| Item | Value |
|---|---|
| gene id | G171860 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 2074696 ~ 2074906 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU195247 | True | 211 | lncRNA | 0.39 | 1 | 2074696 | 2074906 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_02010544_02026521 | NA | coding | downstream | 47971 | 2010142 ~ 2026725 (-) |
| CI01000034_01957876_01995623 | NA | coding | downstream | 78880 | 1957876 ~ 1995816 (-) |
| CI01000034_01842093_01847705 | NR1D1 | coding | downstream | 226991 | 1840937 ~ 1847705 (-) |
| CI01000034_01785791_01788743 | NA | coding | downstream | 284881 | 1785235 ~ 1789815 (-) |
| CI01000034_01718736_01720031 | HOXB13, HOXB13AB, HOXB13A, HOXB13AA | coding | downstream | 354450 | 1718606 ~ 1720246 (-) |
| CI01000034_02092229_02092596 | GNGT2, GNGT2A | coding | upstream | 17053 | 2091959 ~ 2092642 (-) |
| CI01000034_02098976_02103261 | NA | coding | upstream | 22697 | 2097603 ~ 2103261 (-) |
| CI01000034_02110958_02136112 | NA | coding | upstream | 36040 | 2110946 ~ 2136112 (-) |
| CI01000034_02154099_02162106 | NAGS | coding | upstream | 77689 | 2152595 ~ 2162106 (-) |
| CI01000034_02166509_02170478 | NA | coding | upstream | 91095 | 2166001 ~ 2170478 (-) |
| G171815 | NA | non-coding | downstream | 113047 | 1959454 ~ 1961649 (-) |
| G171745 | NA | non-coding | downstream | 121332 | 1952910 ~ 1953364 (-) |
| G171748 | NA | non-coding | downstream | 121918 | 1952458 ~ 1952778 (-) |
| G171743 | NA | non-coding | downstream | 122330 | 1950142 ~ 1952366 (-) |
| G171759 | NA | non-coding | downstream | 213605 | 1860582 ~ 1861091 (-) |
| G171867 | NA | non-coding | upstream | 20944 | 2095850 ~ 2096308 (-) |
| G171849 | NA | non-coding | upstream | 88361 | 2163267 ~ 2165434 (-) |
| G171841 | NA | non-coding | upstream | 328187 | 2403093 ~ 2428544 (-) |
| G171890 | NA | non-coding | upstream | 468257 | 2543163 ~ 2543769 (-) |
| G171907 | NA | non-coding | upstream | 514638 | 2589544 ~ 2589761 (-) |
| G171755 | NA | other | downstream | 208323 | 1864118 ~ 1866373 (-) |
| CI01000034_01312431_01312780 | PRR15LA | other | downstream | 756442 | 1311529 ~ 1312780 (-) |
| CI01000034_01062505_01083413 | NA | other | downstream | 997474 | 1062444 ~ 1083413 (-) |
| CI01000034_00571856_00577732 | NA | other | downstream | 1490413 | 571856 ~ 577775 (-) |
| G171229 | NA | other | downstream | 1807450 | 229404 ~ 267246 (-) |
| G171835 | NA | other | upstream | 366915 | 2441821 ~ 2446293 (-) |
| CI01000034_02510595_02511512 | NA | other | upstream | 434907 | 2510061 ~ 2511521 (-) |
| G172016 | NA | other | upstream | 1160057 | 3234963 ~ 3236615 (-) |
| G172151 | NA | other | upstream | 1316607 | 3391144 ~ 3451802 (-) |
| CI01000034_04165535_04172272 | KCTD13 | other | upstream | 2091593 | 4165373 ~ 4172272 (-) |
