G171849



Basic Information


Item Value
gene id G171849
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2163267 ~ 2165434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU195235
CAAGGTACTTTCAACAGGCCATGAAAAAGCGCAATTCTTTCCACAGCAATAACGGTCGGGTTAAATATAACTATAGTGATATATATCTGTATTATGTGATATACGTTGCCTTAATAAAAATTGTTCATGAACTTCAGCATTGCGTGATACTATTTCAAAGTGATTTCCATCATTTTTACAGATAATAAATTGTATTTACCTGTGAAAACAAACCTGGAAAGAGACGTGAGGCTTTGAGGAGAAAAACGAGAGATTCTTCGTGCATTCCAGTGAATTATTAATGGGATATATTGTAAATTATATCGGGAGAACAGACCACAAATGTGCAGTATATGTTGTCCTTTTTCATACTATTACAGCGGTATGCAAAGGGACAAAAGAAAATAATCACGAGGATAGAAAGCAACGACTAAAAAGAGCTCTTGCCATAGATATTCTTGTTATAACATGTTACGTTAAAATACCAAGCGTTACGTTATTCCCATGATGTTTGAAAATAAAACATGAAAGAAAAATTGACAGCTCATTCAGTCAAACTGACGGATAAGCTTTATTTGTAGGGCAACCGGATTTGTAACGATTCGCGATTCGTTTCAGTCTTTTTAAATGGAAGTTCCCCAAACCGGAAGTGCAACCCATAATTCGAAACGCAGTATAGTCAGGAATAAGGTGGATAGGATATGTCAATAATTATGTTCCTTATTACAATAAAATCTATTAATACATTTAAATTTTTATTTCCTAGCCCCTCCTGATAAAACTCATCATGTGTCTTTGTATACTCAAAACAGACTGTTAAATTCATTTCGTTGGGGTTGGCTGTAAAGCCTCAAAGATTAAATCTCTGCAACTGCTGTCAAAGGATTACACATCAATTAATAGGCCTACGCATGGTTCCACAAGCCCCCGTTACTGAACTTTCAAATCATAATTTCATGATACACATTTAGTTGCACATGGGGAAGCCCTCTAGGTTGTTATATCGATCTGTATTATTAAAACATGTACAAACTATCAAAATTTTATCCTCAGTTGCTTTGCTGTGAGGCTGGGTTTTAAACCACTGGAGTTTAAACAGATTTGTGTGGAGATTTTTGTGGACCGAGAAAGTGAGGAAATCCAGGTCAGTGAGTGTTTGGCGCCATATGGAGCTCTCACTGACAGCAGCATCATCAGATTACCCTCCTGACGGACAAACAGAGGATTCTTGAGGGAAATACCAGCTTTCGAGTTGAATTCATATGGCCTATAGTATAAGACTCTTTATGCTCCTTTCTGTTTGACATATTATATGGACATACTTAGCAAATAATGTAATAGGCTGTGAAGCTGACCTACAAACTAGACAGCTAAAGATGAGACATCAAACAAAAGTAAATGAATACATCTGATCTGACAATTTCCTGACATTAAGCTAATTTCACCACATAAGTCTTGATGCAAAAACTTGAGAAAATGAGATCCATGCAGTCCAGCAATGATTATATCAGAGATCAAATTTGAATAAGGAATAGCAAATTTATTAATTAAAAATTATAGAGACAAACAAATTCATTAAGTAATTAATAGTTAATAATAAAATCCAGAGTATGATATCTAATAGATGATGAAGAATATACAGAAAGAAGGAACAAAATTAAGACATTTGCAGAATGAAATGAGAGATAGAAGAGAAGAAGCAGAAGCAGACGATGCAGAAGAGATGCGAGAAGCAAAAAGAGCAAAGAAGAAGTAAAGAAAAGCAAAGAAAAAGCTAAACTATCAAAGACCCAGTCCGTTTTATACCATTAGCATAGGGAAACTTACATCCTACTCAAACTTATGTTTTGGTCTAATAAAAAAAGGCCAAATGGATTTATCCATCATGTCATAGACTGGTCAGATGTCAAAAATAGATGAAAATAGATATAGGGGTTGTTTTGACACCCTTAAGGGAATTTTGCAGATCTTACATTATCACATGTCAGCAGGAATAGAAATGGACATATTTTGATACAAAAGTACATCGAGTTGAAATGAGCAACTAATTCCGAAAACATCGCTTCTGCAGTAGGCTACTTGGCAGGTGTCCAATATCTAACCACAAACGTGTCATCATGACCTGTCACATTGGAACACTTTGAAGAACAATTGAATATAGCAAGCATAGAAGAATAACCATAAAGGAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU195235 True 2168 lncRNA 0.35 1 2163267 2165434

Neighbor


gene id symbol gene type direction distance location
CI01000034_02154099_02162106 NAGS coding downstream 1161 2152595 ~ 2162106 (-)
CI01000034_02110958_02136112 NA coding downstream 27155 2110946 ~ 2136112 (-)
CI01000034_02098976_02103261 NA coding downstream 60006 2097603 ~ 2103261 (-)
CI01000034_02092229_02092596 GNGT2, GNGT2A coding downstream 70625 2091959 ~ 2092642 (-)
CI01000034_02010544_02026521 NA coding downstream 136542 2010142 ~ 2026725 (-)
CI01000034_02166509_02170478 NA coding upstream 567 2166001 ~ 2170478 (-)
CI01000034_02171666_02177554 LSM12A, LSM12 coding upstream 6170 2171604 ~ 2178398 (-)
CI01000034_02182977_02213069 HDAC5 coding upstream 17530 2182964 ~ 2213069 (-)
CI01000034_02295276_02337198 TANC2A, TANC2 coding upstream 129842 2295276 ~ 2337198 (-)
CI01000034_02459679_02504620 WNK4B coding upstream 294245 2459679 ~ 2505022 (-)
G171867 NA non-coding downstream 66959 2095850 ~ 2096308 (-)
G171860 NA non-coding downstream 88361 2074696 ~ 2074906 (-)
G171815 NA non-coding downstream 201618 1959454 ~ 1961649 (-)
G171745 NA non-coding downstream 209903 1952910 ~ 1953364 (-)
G171748 NA non-coding downstream 210489 1952458 ~ 1952778 (-)
G171841 NA non-coding upstream 237659 2403093 ~ 2428544 (-)
G171890 NA non-coding upstream 377729 2543163 ~ 2543769 (-)
G171907 NA non-coding upstream 424110 2589544 ~ 2589761 (-)
G171937 NA non-coding upstream 504722 2670156 ~ 2670385 (-)
G171939 NA non-coding upstream 505421 2670855 ~ 2671069 (-)
G171755 NA other downstream 296894 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 845013 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 1086045 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1578984 571856 ~ 577775 (-)
G171229 NA other downstream 1896021 229404 ~ 267246 (-)
G171835 NA other upstream 276387 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 344379 2510061 ~ 2511521 (-)
G172016 NA other upstream 1069529 3234963 ~ 3236615 (-)
G172151 NA other upstream 1226079 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 2001065 4165373 ~ 4172272 (-)

Expression



Co-expression Network