XLOC_009034 (trappc4)


Basic Information

Item Value
gene id XLOC_009034
gene name trappc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9315177 ~ 9321970 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017804
tttgtcTACGTCATAAAGTCACATGATCGCCCGAATGACAGTCAGGAAGAAAGATGGCGATCTTCAGTGTGTATGTTGTCAATAAAGCTGGTGGACTTATTTACCAGTACGATAATTATGTACCTCGAGCTGAAGTGGAAAAAACATTTAGCTTTCCGCTCGATTTAGTGTTAAAGATTCACGATGAGAAGGTTGTCGTGTCATTCGGACAGCGGGACGGAATCAGAGTGGGTCATGCGGTTCTGTCCATTAATGGGGTAGACGTGAATGGTAAATTCACTGCGGAAGGGAAGGAGATTCAGGAGTATCTGAGAGATCCTGCAAACTATCCAGTGTCCATCAGATTCGGCAGACAGAGACTCTCTTCAAACGAGAAGCTCATGCTGGCCTCAATGTTTCACTCGCTCTTTGCTATTGGATCACAGTTGTCACCAGAAGTTGGCAGCTCTGGCATTGAAATGCTGGAGACAGATATGTTTAAACTGCACTGCTTTCAGACACTCACAGGTATAAAGTTCATTGTATTGGCAGACCCTCGACAGTCTGGCATCGATGCCCTGCTTAGAAAGATTTATGAAATCTACTCCGACTTTGCACTGAAGAACCCGTTCTACTCTTTAGAGATGCCTATCAGATGTGAACTATTTGACCAAAACCTAAAGAGTGCCCTGGAAATAGCAGAGAAAGCAGGGACGTTTGGACCAGGGTCCTGAATTGAACTGTCCAGAAGTACAGCCAAAGTATTTCCATCAACTTTTTAaggaaaacaaacaagactttttcaCAAGCTCAAATAATTTAACCCTGGACTATTATACACTGTTCCTCAAATTAAGTCTAAAATTTACAGCGAGAACTGTTTCACattaattttgtaaataatgtacATGGATGCAGTTTGTTTGCAATATTCATGCAGAACCTCGAAAGAAAATGGTGCAGCTCAACAAATGTTCATTGAAGTATGTTTATTACCATCTATACAAGTATCATTGATGTggcgtttgtgtttgtgtgtgtaatttactCCCTgttaacagaaaatgaaaagtctaAACCTTGGATCTGTAGTTTGGGTCCAAAATGTGCTCaaagagaaaatattttaattctgtcatcatttactttatgttggaaaccggtaaccattgcatccatagtatttgtttctcctactatagaagtcaatggttactcgtttttaacattcttcaaagtatcttttttgtgtttaacttaaCAATAAAATCTTTAAACTGGTTTGAAATGCGTCAATGGTGAGAAAATGAGGACAGAATTACCATTTgggtgggtgaactatccctttcagttaAAAAGAGGTCAAACAAAGATGTCAGGAAAatctttccttttttaatttattacattgtGTTATTAAACATTCATGTGATAACATTCTTATGTCACATATGtcatatttttaatacaatagaGGTAGGACCAGTTAAAGCTTTGAAAGGCATAAAGAAATGCACGCTATTCTTAAATGGCTTTAACCTGCCTTAATGAACTACTTATATACAGTCAAAAATGCTGctcgtttaaactacttatttaaagtgagtTCAAACAACAAAACTCTTAAGTTTCTTCTGGgagaacttaaatgttttatgttcaatccacttaaatttgtaaaaacgatctATTTGTGTTGAGTCTGTAATCTGTTTTTTAAAACGAGCAGAATAAATAACATGATGTGCTTCTGAAAGTGACACAA
>TCONS_00017805
AAAGATGGCGATCTTCAGTGTGTATGTTGTCAATAAAGCTGGTGGACTTATTTACCAGTACGATAATTATGTACCTCGAGCTGAAGTGGAAAAAACATTTAGCTTTCCGCTCGATTTAGTGTTAAAGATTCACGATGAGAAGGTTGTCGTGTCATTCGGACAGCGGGACGGAATCAGAGTGGGTCATGCGGTTCTGTCCATTAATGGGGTAGACGTGAATGGTAAATTCACTGCGGAAGGGAAGGAGATTCAGGAGTATCTGAGAGATCCTGCAAACTATCCAGTGTCCATCAGATTCGGCAGACAGAGACTCTCTTCAAACGAGAAGCTCATGCTGGCCTCAATGTTTCACTCATGTGAACTATTTGACCAAAACCTAAAGAGTGCCCTGGAAATAGCAGAGAAAGCAGGGACGTTTGGACCAGGGTCCTGAATTGAACTGTCCAGAAGTACAGCCAAAGTATTTCCATCAACTTTTTAaggaaaacaaacaagactttttcaCAAGCTCAAATAATTTAACCCTGGACTATTATACACTGTTCCTCAAATTAAGTCTAAAATTTACAGCGAGAACTGTTTCACattaattttgtaaataatgtacATGGATGCAGTTTGTTTGCAATATTCATGCAGAACCTCGAAAGAAAATGGTGCAGCTCAACAAA

Function

symbol description
trappc4 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Orthologous to human TRAPPC4 (trafficking protein particle complex subunit 4).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0030008 TRAPP complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1734 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Orthologous to human TRAPPC4 (trafficking protein particle complex subunit 4).

Ensembl:

ensembl_id ENSDARG00000027418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017804 False 1744 mRNA 0.37 5 9315177 9321970
TCONS_00017805 True 671 mRNA 0.41 3 9315970 9321921

Neighbor

gene id symbol gene type direction distance location
XLOC_009033 si:ch211-261a10.5 coding downstream 20248 9278992 ~ 9294929 (-)
XLOC_009032 calm3a coding downstream 42849 9234052 ~ 9272328 (-)
XLOC_009031 NA coding downstream 123900 9189153 ~ 9191277 (-)
XLOC_009030 rtn2a coding downstream 283181 9010891 ~ 9031996 (-)
XLOC_009029 rhoub coding downstream 313022 8990577 ~ 9002155 (-)
XLOC_009035 sacs coding upstream 45131 9367101 ~ 9421481 (-)
XLOC_009036 gab2 coding upstream 123012 9444982 ~ 9593532 (-)
XLOC_009037 nars2 coding upstream 279667 9601637 ~ 9631592 (-)
XLOC_009038 tenm4 coding upstream 678583 10000553 ~ 10455569 (-)
XLOC_009039 AL807754.1 coding upstream 864084 10186054 ~ 10186169 (-)
XLOC_009028 CR847977.1 non-coding downstream 327418 8987643 ~ 8987759 (-)
XLOC_009025 NA non-coding downstream 713083 8599591 ~ 8602094 (-)
XLOC_009023 NA non-coding downstream 920576 8350029 ~ 8394601 (-)
XLOC_009017 NA non-coding downstream 2249864 7064468 ~ 7065313 (-)
XLOC_009040 CT573316.3 non-coding upstream 1434240 10756210 ~ 10759101 (-)
XLOC_009041 BX293559.2 non-coding upstream 1651747 10973717 ~ 10986106 (-)
XLOC_009042 BX293559.1 non-coding upstream 1775899 11097869 ~ 11099720 (-)
XLOC_009045 NA non-coding upstream 2092721 11414691 ~ 11423104 (-)

Expression


Co-expression Network