G171835


Basic Information

Item Value
gene id G171835
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2441821 ~ 2446293 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195220
GGAGTCCTCAGTTCAGTCTAAATCAGCCGTGGATGAGCTACACGCGCAGCACATCATACGCCAGCAGCGACGAGACAGAGAGTGAAGACGAGGGAATGTATGAGGAGCTACAGGAACTCAGAGAGAGACATGTGGCAGAGGTGCAGGCTCTCCAGGCCTCTCAAAAGCAAGAGATTGAGGAGCTCTACAAACGGATGGGTAAAGTGCCCCCTCCGGGAATCGTGTCCCCAGCGGCCATGTTGTCCAGCCGCCAGCGCCGTCTGTCTAAGAGCGGAGGGTACCCCACCTCTCGCCGAAATAGCCTGCAAAGACTGGACATACTGCCACCTACAGGTATCATACGGAAGAACTCAGTTAGCGGCAGCAGCAGTGGGTCACAGGAGAGGAACAGTAAAGGAGTGACCTTTGCCACTGATTATGCCAGAATTTGATTTCTTTTGCTGAGGAGCTCTTTGGCCCCCGTCCTACTCTTGTTATGGATTGAAGTGACAACATTGCGTCCTCATGAAACTGCATGTGTGAGCACATGTTTGTAGAAAGAAGAGTGTTTTCTTCACAGGCTGTGATGTGAATATTTTAACCAGTATACCTCTGCTCAGTATTCTAAGGATGACTTGCTTACCTAGTGAGCTTTCTAAAGAGACACGGCATTTGTAAGCACAGACTTTATACATGAAATGTGTTTAGAGATGCGATGTAGCTGATCTCAGCACTGATTTATGGAGAAATGCCCACTCGTTTTCAGCTTTAGCACCCCGGTGGTTGAATGTATAATGTCCATGTGGTTGCTCTTTTCGCTATAATTTTGTCCATATTCCATTAATTATAGCTCAACTTGTCAGTTAATTTTTATTTTCAAACTCCCAGGAAGTCATAAATACCTGAATGAATCGGTACTGTAAACAGTTTAACTTTTTTCTTTTGGAAAATTACGATGCAATTGAATGCATGCAGTCCTTATAAGAACTTTTAGGCCTCACTGTAGGTTTGCTTTTACATAAAACAGTATCATGTATATATTTGACAAATTGTAAAAATGTTCATCATAGATTACAGTTCAAATGTGACTTTGTTGCTGAAATATTTTGCACACACCAATTGCACAAATAGGTTGTTTTTTTTTAATTTCCATAACTCACAGTATTGATAATGATTTTATTTCTCTTTTTTGATAGAGAACCTTCCTAAAATTTCTCTCTGATTGTTGTAGATATTGTGAGTATCCACATCATAAATCAATGCAGAATGCAAGTTCTGGAATCATTGTAATATTTAAATGAGGATAATAAGCATATTTTAATGTGCTTATCAGTCAAATCTCATTTAGATGTTGCATAAAAGTGACTGAATAAATGGATTTCTGGTGATATCAATCTAAACAAAGTATCTAAATCCATATTTTAGAGAACAAATAGTGGACAATCACTCAAATAAACCTGCCTGCAATTCATTAAATACCCATACTGCCATTTTTTTCTATATTATAAATTGTAAATTATACATTTAGTTTTAATTTTAGTAGGTACTGATTAAGAATTTAAATCATACAGTGAATTTGCTTTGAAACTCTTCCGTCTTAATGCTTTTCCTTTTGTTATTCGTATCTTAATAGTTAATAGAGTGTGAAATGCGGATGTTAACTCGTGTTTTCTTAATTGAAAGACGAAATACAAGCAAACACTGACACATCGCACTTTTCTGTAAGGCGTTTGCCAGTAGATGATCTGTATATAAGGACAGGGTTGAATTGCGGCGTGTCTAAGATTGCCACTGCCTATGCAGCGATTTTACATATATATTAATGTGTGAAGATAAAAAGAAACATTGACAACTGAGAAACTGTGAAGTTTGAACAATTGTTGCCTTAAAGTATCTGCATTTGATGGGACAGCAGGTGTGTTCTACTGCATAGCAAGAAAAGATTTATATATATAGATATATTTGGATAAAGAGAAAAGCTGTATTATATTATGTGGGGGAAAAATGTTGTACTGCCATTCAGATTGTGCCTCTTTTTTTCCTTTTTTTACTCTAATTTCTGGATGAAACATGATTGTTGTAAATATACAAATAAATAATGATTCACAAACAACCGAATGTTTCCTGAGATTAAAACTGTATGAACATGTCATATACGCTGGG
>TU195221
GGAGTCCTCAGTTCAGTCTAAATCAGCCGTGGATGAGCTACACGCGCAGCACATCATACGCCAGCAGCGACGAGACAGAGAGTGAAGACGAGGGAATGTATGAGGAGCTACAGGAACTCAGAGAGAGACATGTGGCAGAGGTGCAGGCTCTCCAGGCCTCTCAAAAGCAAGAGATTGAGGAGCTCTACAAACGGATGGGTAAAGTGCCCCCTCCGGGAATCGTGTCCCCAGCGGCCATGTTGTCCAGCCGCCAGCGCCGTCTGTCTAAGAGCGGAGGGTACCCCACCTCTCGCCGAAATAGCCTGCAAAGACTGGACATACTGCCACCTACAGGTACCATAGGTATCATACGGAAGAACTCAGTTAGCGGCAGCAGCAGTGGGTCACAGGAGAGGAACAGTAAAGGAGTGACCTTTGCCACTGATTATGCCAGAATTTGATTTCTTTTGCTGAGGAGCTCTTTGGCCCCCGTCCTACTCTTGTTATGGATTGAAGTGACAACATTGCGTCCTCATGAAACTGCATGTGTGAGCACATGTTTGTAGAAAGAAGAGTGTTTTCTTCACAGGCTGTGATGTGAATATTTTAACCAGTATACCTCTGCTCAGTATTCTAAGGATGACTTGCTTACCTAGTGAGCTTTCTAAAGAGACACGGCATTTGTAAGCACAGACTTTATACATGAAATGTGTTTAGAGATGCGATGTAGCTGATCTCAGCACTGATTTATGGAGAAATGCCCACTCGTTTTCAGCTTTAGCACCCCGGTGGTTGAATGTATAATGTCCATGTGGTTGCTCTTTTCGCTATAATTTTGTCCATATTCCATTAATTATAGCTCAACTTGTCAGTTAATTTTTATTTTCAAACTCCCAGGAAGTCATAAATACCTGAATGAATCGGTACTGTAAACAGTTTAACTTTTTTCTTTTGGAAAATTACGATGCAATTGAATGCATGCAGTCCTTATAAGAACTTTTAGGCCTCACTGTAGGTTTGCTTTTACATAAAACAGTATCATGTATATATTTGACAAATTGTAAAAATGTTCATCATAGATTACAGTTCAAATGTGACTTTGTTGCTGAAATATTTTGCACACACCAATTGCACAAATAGGTTGTTTTTTTTTAATTTCCATAACTCACAGTATTGATAATGATTTTATTTCTCTTTTTTGATAGAGAACCTTCCTAAAATTTCTCTCTGATTGTTGTAGATATTGTGAGTATCCACATCATAAATCAATGCAGAATGCAAGTTCTGGAATCATTGTAATATTTAAATGAGGATAATAAGCATATTTTAATGTGCTTATCAGTCAAATCTCATTTAGATGTTGCATAAAAGTGACTGAATAAATGGATTTCTGGTGATATCAATCTAAACAAAGTATCTAAATCCATATTTTAGAGAACAAATAGTGGACAATCACTCAAATAAACCTGCCTGCAATTCATTAAATACCCATACTGCCATTTTTTTCTATATTATAAATTGTAAATTATACATTTAGTTTTAATTTTAGTAGGTACTGATTAAGAATTTAAATCATACAGTGAATTTGCTTTGAAACTCTTCCGTCTTAATGCTTTTCCTTTTGTTATTCGTATCTTAATAGTTAATAGAGTGTGAAATGCGGATGTTAACTCGTGTTTTCTTAATTGAAAGACGAAATACAAGCAAACACTGACACATCGCACTTTTCTGTAAGGCGTTTGCCAGTAGATGATCTGTATATAAGGACAGGGTTGAATTGCGGCGTGTCTAAGATTGCCACTGCCTATGCAGCGATTTTACATATATATTAATGTGTGAAGATAAAAAGAAACATTGACAACTGAGAAACTGTGAAGTTTGAACAATTGTTGCCTTAAAGTATCTGCATTTGATGGGACAGCAGGTGTGTTCTACTGCATAGCAAGAAAAGATTTATATATATAGATATATTTGGATAAAGAGAAAAGCTGTATTATATTATGTGGGGGAAAAATGTTGTACTGCCATTCAGATTGTGCCTCTTTTTTTCCTTTTTTTACTCTAATTTCTGGATGAAACATGATTGTTGTAAATATACAAATAAATAATGATTCACAAACAACCGAATGTTTCCTGAGATTAAAACTGTATGAACATGTCATATACGCTGGG
>TU195219
GGAGTCCTCAGTTCAGTCTAAATCAGCCGTGGATGAGCTACACGCGCAGCACATCATACGCCAGCAGCGACGAGACAGAGAGTGAAGACGAGGGAATGTATGAGGAGCTACAGGAACTCAGAGAGAGACATGTGGCAGAGGTGCAGGCTCTCCAGGCCTCTCAAAAGCAAGAGATTGAGGAGCTCTACAAACGGATGGGTAAAGTGCCCCCTCCGGGAATCGTGTCCCCAGCGGCCATGTTGTCCAGCCGCCAGCGCCGTCTGTCTAAGAGCGGAGGGTACCCCACCTCTCGCCGAAATAGCCTGCAAAGACTGGACATACTGCCACCTACAGGTACCATAGGTATCATACGGAAGAACTCAGTTAGCGGCAGCAGCAGTGGGTCACAGGAGAGGAACAGTAAAGGAGTGACCTTTGCCACTGATTATGCCAGAATTTGATTTCTTTTGCTGAGGAGCTCTTTGGCCCCCGTCCTACTCTTGTTATGGATTGAAGTGACAACATTGCGTCCTCATGAAACTGCATGTGTGAGCACATGTTTGTAGAAAGAAGAGTGTTTTCTTCACAGGCTGTGATGTGAATATTTTAACCAGTATACCTCTGCTCAGTATTCTAAGGATGACTTGCTTACCTAGTGAGCTTTCTAAAGAGACACGGCATTTGTAAGCACAGACTTTATACATGAAATGTGTTTAGAGATGCGATGTAGCTGATCTCAGCACTGATTTATGGAGAAATGCCCACTCGTTTTCAGCTTTAGCACCCCGGTGGTTGAATGTATAATGTCCATGTGGTTGCTCTTTTCGCTATAATTTTGTCCATATTCCATTAATTATAGCTCAACTTGTCAGTTAATTTTTATTTTCAAACTCCCAGGAAGTCATAAATACCTGAATGAATCGGTACTGTAAACAGTTTAACTTTTTTCTTTTGGAAAATTACGATGCAATTGAATGCATGCAGTCCTTATAAGAACTTTTAGGCCTCACTGTAGGTTTGCTTTTACATAAAACAGTATCATGTATATATTTGACAAATTGTAAAAATGTTCATCATAGATTACAGTTCAAATGTGACTTTGTTGCTGAAATATTTTGCACACACCAATTGCACAAATAGGTTGTTTTTTTTTAATTTCCATAACTCACAGTATTGATAATGATTTTATTTCTCTTTTTTGATAGAGAACCTTCCTAAAATTTCTCTCTGATTGTTGTAGATATTGTGAGTATCCACATCATAAATCAATGCAGAATGCAAGTTCTGGAATCATTGTAATATTTAAATGAGGATAATAAGCATATTTTAATGTGCTTATCAGTCAAATCTCATTTAGATGTTGCATAAAAGTGACTGAATAAATGGATTTCTGGTGATATCAATCTAAACAAAGTATCTAAATCCATATTTTAGAGAACAAATAGTGGACAATCACTCAAATAAACCTGCCTGCAATTCATTAAATACCCATACTGCCATTTTTTTCTATATTATAAATTGTAAATTATACATTTAGTTTTAATTTTAGTAGGTACTGATTAAGAATTTAAATCATACAGTGAATTTGCTTTGAAACTCTTCCGTCTTAATGCTTTTCCTTTTGTTATTCGTATCTTAATAGTTAATAGAGTGTGAAATGCGGATGTTAACTCGTGTTTTCTTAATTGAAAGACGAAATACAAGCAAACACTGACACATCGCACTTTTCTGTAAGGCGTTTGCCAGTAGATGATCTGTATATAAGGACAGGGTTGAATTGCGGCGTGTCTAAGATTGCCACTGCCTATGCAGCGATTTTACATATATATTAATGTGTGAAGATAAAAAGAAACATTGACAACTGAGAAACTGTGAAGTTTGAACAATTGTTGCCTTAAAGTATCTGCATTTGATGGGACAGCAGGTGTGTTCTACTGCATAGCAAGAAAAGATTTATATATATAGATATATTTGGATAAAGAGAAAAGCTGTATTATATTATGTGGGGGAAAAATGTTGTACTGCCATTCAGATTGTGCCTCTTTTTTTCCTTTTTTTACTCTAATTTCTGGAT

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195220 False 2142 TUCP 0.37 4 2441821 2446293
TU195221 False 2151 TUCP 0.37 4 2441821 2446293
TU195219 True 2053 TUCP 0.38 4 2441919 2446293

Neighbor

gene id symbol gene type direction distance location
CI01000034_02295276_02337198 TANC2A, TANC2 coding downstream 104623 2295276 ~ 2337198 (-)
CI01000034_02182977_02213069 HDAC5 coding downstream 228752 2182964 ~ 2213069 (-)
CI01000034_02171666_02177554 LSM12A, LSM12 coding downstream 263423 2171604 ~ 2178398 (-)
CI01000034_02166509_02170478 NA coding downstream 271343 2166001 ~ 2170478 (-)
CI01000034_02154099_02162106 NAGS coding downstream 279715 2152595 ~ 2162106 (-)
CI01000034_02459679_02504620 WNK4B coding upstream 13386 2459679 ~ 2505022 (-)
CI01000034_02510595_02511512 NA coding upstream 64041 2510061 ~ 2511521 (-)
CI01000034_02513892_02532734 ARHGAP27L coding upstream 67585 2513878 ~ 2532734 (-)
CI01000034_02575638_02577407 NA coding upstream 129051 2575344 ~ 2577572 (-)
CI01000034_02581924_02584745 NA coding upstream 135286 2581579 ~ 2584745 (-)
G171841 NA non-coding downstream 13277 2403093 ~ 2428544 (-)
G171849 NA non-coding downstream 276387 2163267 ~ 2165434 (-)
G171867 NA non-coding downstream 345513 2095850 ~ 2096308 (-)
G171860 NA non-coding downstream 366915 2074696 ~ 2074906 (-)
G171815 NA non-coding downstream 480172 1959454 ~ 1961649 (-)
G171890 NA non-coding upstream 96870 2543163 ~ 2543769 (-)
G171907 NA non-coding upstream 143251 2589544 ~ 2589761 (-)
G171937 NA non-coding upstream 223863 2670156 ~ 2670385 (-)
G171939 NA non-coding upstream 224562 2670855 ~ 2671069 (-)
G171926 NA non-coding upstream 233385 2679678 ~ 2735927 (-)
G171755 NA other downstream 575448 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 1123567 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 1364599 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1857538 571856 ~ 577775 (-)
G171229 NA other downstream 2174575 229404 ~ 267246 (-)
G172016 NA other upstream 788670 3234963 ~ 3236615 (-)
G172151 NA other upstream 945220 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 1720206 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 1769919 4216212 ~ 4221881 (-)

Expression


Co-expression Network