G169922


Basic Information

Item Value
gene id G169922
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2506645 ~ 2509031 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193050
GGATAGTTCACTCAAAAAGTCATCATTTATTCATTCACTAAAACTGTATCCAAACAACACTGGACACCACTGACTTCATTGTACAATCTTAAAAATAAAGGTTATTTATTGGAATCTATGATTCCATGAAGCACCTTTAACATCCATGGAACCTTTCCATTTGACAAAAGGTTTTTTTTAGAGTGGAAAAAGTTCATTAGATTAATAAAATGTTCTTCATGCTAAGAAAAAATGGGTTCTTTTAGGAACAGTTCACAGTTCAGAAAGGTTCTCCTATGGCATCACTGTAAAAACCACATTTAAGAGTTTATAGACAAAACATACTTTCTTTTAAATGTGACCAGGGACCACAAAACCAGTCATAAGGGTCATTTTTTTTTTAAAAATTAAAATCATCTGAATAAGTTGAATAAATAAGCGTTCCATTGATGTGTGGTTTGTTAGGATAGGACAATATCTGGCCGAGATACAACTATTTGAAAATCTGGAATCTGAGGGTGCAAAAAAATTCACAAAAATAAATTTTTAATATATATATGGTGGGAAATTTACAAAATATCTTCATGGAACATGATCTTTACTTAATATCCTAATGATTTTTGGCATAAAAGAATAATCGATAATTTTGACCTATACAATGTATCGTTGGCTTTTGCTACAAATATACCCGTGCCACTTATGACTGGTTTTGTGGTCCAGGGTCACAATTATGTTCTTTTGTGTTTCACAGAAAAAAACAAAGTCATCCAGTTTTGGAAATTAGGTGAATAACATGATGGTGAATAAATGGACAGAATTTCCCCTTTTGGGTACACGGTAAAACCGAACAGTGAAATTAATTAAATTAAATGAGTTTGTTTCTCTCTAATAATAAAGTTCATTGTACTTAATAGAAAAAAGTTGTGTGAACTCAATTTCATTGTAGTAAGTATATTACTAAGTTGAGTTGCAGCAGATTTCTAATTCCCAGCATCCTCTGCATGTTGAAATTAAAAATGTCTGCATGTTGAATGTTGAAATTAAGTGTTATTTTGTGTGTTTTTGCACAAGATTAACATAGGGAGACATAAGTTAGTGTTTAATGTTGTGTTATTTTGGGATTTACAGGGGGTTCTATTTTTGTTAGTTTTGTAGGGTTACCATTGTGGTGAAGAGCAGAGCCTGCGGTTAGGTTGAGGATGGGCGGCAAAACTTTTGTTGTTTTGTATGTAATGTATTTGGTTTGATTATATACATGCAAGTCTATAATGACAGTCTCTTTGATAGTTATAATAGCATGTGTTATTTGCTTTCTAACATTTAACCCAGATCTGAATATGATGTTTATGTAAATTAACTGTATGTAATTAACTTTATGATGAGTTGGGTGAGGCTGAGAACTGTAGGAGTGAAGGGATGCTGGTGACTTGTTAATGAGAGACACCTGTGCCACACTGGCCTTGCTCCACTTCCACTTCCACAGCTCTCAGCCCCGCCCCACTTGTCACAAAAATTTTAAGTTCTACTAACTTAAATAAAAGAGTTAGTTTACTTAAATGTTTGAGGTAATAAGTTTCCTCAAATGTTTTGAGTGTTCTGAACTTATTGAGTTCTACAGTGTAGCTGTTTCTTTAAAGGAGTTTTCAGAACAGTTAAATTGGCTGGCCTGCAAACTGAACGATGCACTTAAATGTCATCTAAAACAGTATCAGAACACCGAAGGATGTCTGTTGTGACAGCTTCGCTGAACTGAATGACCGAATTTCACAAGCATTCTAACAAAATAACGTGTCTAAAAACGATAAAGAAGATATGCATGTGGTCCAGAATGGAGCTATAGATGAGCTTGTGTAGAGGAGATATCTCAGACCCCCTGAGCGAGATACAGCATAGCTAGTGCCTGGGGCTCTGAACTGCCCCACGTGACACACAAGCTCACAAGACAGAATTATGTGTGTGCATGCTTATCAGGATGAACATATTGCTGCTCCGTGAGCAGCTGGGCCTCTCAACCTCCACTCTGTACTAATCAACCTCTCCCCCTGTAAAACTTTTGCCTATTCATATTTCATATTAAGAACATCTTATTGGAAAACATCTATAAATAAAATTTCTGAATGAAACTGTTGCCTAGTCCACCTTTTCTTTAAAAACAAAAAAGCTAATAAATAAACAAACAGTGAGATGAGACACTTAAAATGGAAGTAAATCAAAGGATTTAAAAGCAGAATAAATATATATATAGAGAGAGAGAGATGTATAGTTAATTAGATTGTTGTTTTGTGGCATTACAGGTTTGCGACATTGCATTATCACCTCATCAACATTGTAACTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTTTGTTATTAATTACTCATGTCGTTCCAAACCAGTAAGACTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU193050 True 2387 lncRNA 0.34 1 2506645 2509031

Neighbor

gene id symbol gene type direction distance location
CI01000034_02421189_02423360 NA coding upstream 83118 2421026 ~ 2423527 (+)
CI01000034_02275470_02281951 CYB561 coding upstream 224041 2274601 ~ 2282604 (+)
CI01000034_02256162_02260170 NA coding upstream 246181 2255765 ~ 2260464 (+)
CI01000034_02231423_02231755 NA coding upstream 274521 2231303 ~ 2232124 (+)
CI01000034_01900645_01947187 RAPGEFL1 coding upstream 559458 1900645 ~ 1947187 (+)
CI01000034_02550332_02552258 NA coding downstream 41301 2550332 ~ 2552839 (+)
CI01000034_02563086_02564052 NA coding downstream 53907 2562938 ~ 2564172 (+)
CI01000034_02662209_02664649 MYL4 coding downstream 153178 2662209 ~ 2665540 (+)
CI01000034_02688043_02705526 MAPTB coding downstream 178914 2687945 ~ 2705564 (+)
CI01000034_02770255_02774341 NA coding downstream 261068 2770099 ~ 2774567 (+)
G169906 NA non-coding upstream 29179 2476276 ~ 2477466 (+)
G169760 NA non-coding upstream 202547 2235008 ~ 2304098 (+)
G169768 NA non-coding upstream 246841 2243834 ~ 2259804 (+)
G169686 NA non-coding upstream 324500 2170179 ~ 2182145 (+)
G169692 NA non-coding upstream 339719 2166484 ~ 2166926 (+)
G169921 NA non-coding downstream 748 2509779 ~ 2510694 (+)
G169927 NA non-coding downstream 39603 2548634 ~ 2588029 (+)
G169946 NA non-coding downstream 79909 2588940 ~ 2589235 (+)
G169947 NA non-coding downstream 81330 2590361 ~ 2590615 (+)
G169974 NA non-coding downstream 146165 2655196 ~ 2658101 (+)
G169806 NA other upstream 168955 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 775468 1729413 ~ 1731179 (+)
G169340 NA other upstream 1195767 1250219 ~ 1310878 (+)
G169394 NA other upstream 1313085 1150297 ~ 1193560 (+)
G169357 NA other upstream 1387626 1053543 ~ 1119019 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 925105 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 1616069 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 1685607 4192311 ~ 4200636 (+)

Expression


Co-expression Network