G169927


Basic Information

Item Value
gene id G169927
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2548634 ~ 2588029 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193058
TTTTTTTTTTTTTTTTTTTTTTTTTGCAGTTTAGAAATTTAATGGATAAAGACACACAGCTTCAAGAGAACAGCATGAGCTAATAATATGGACATAATCTATCAGACAGACAAATGTTTACATTCATACACTTGGTTGAGAGTGAACCCATCCATCCAAATGACAGTTTCGACAAAAGGCATCTTTAGCCATTTTTGGAGCCATAAAATACTAGAGTCAAAGCGATTTGGGCACATTTGAAAATATATTGCCATATATTGCTTAGCACCACTGTGAAATGTTAAATCAGATCTTAATATCTTTAATTTACGAGCACTCCCCAATGAGAAGAATAAATACAATAGTGTTGGGTTTAGATATGGGAGGGAACTAGAGAACAGACCTAGCCATGCCTGGTTGACATTTCCTGCATATATAAGACCAGATAATAATTATATTAGGAGATTTTGAGGACTTAAATTGGTTTTAGATTTGCAGCAAAGTGTGTCACAGGCTTTGGCTAGCAATACATTGGCGCCATCTACAGGGTGCAGTTTGAATCCAGGGATCTCCTGCAATTCGCAACCCTCAGGTAAGTTTCCACCTTGTGCATGTCCTTCTTGAAGCAAGCCAGAAGACGAAAGCTCTCTCTGAGGCTGCTCTCCCCCATGGTCAAGTAGAAATCCTCAAAAGGCAGTGGCAGGGAGTCGTTATCATCCATGTTTGGTTGACCATCCAGACATCCCTTGAGCACGCTGATGCCCACTTTCAAGTCGGCCAGCTTCTCAGTGATCTGGTTGGGGTTCCCGACGGTCAGACTGTTTGAGACGGCTCCGCTCAGGGTCTGGCTGGGGAACTCCCAGGACTCAATGAGGCGGAAAGAGATGCGAAGGAGCTTCATACAGAGCTCTTCTGCGTTTCATCTTTTCCAGTGGGCGCCTCAATTGAGTCAGAGTTGCAGAAAGACAGAGGAAAGATTTTACTCAGCTGTCTGCGTTCCTCAGGCAACAGGTTGTCCTCCTTGATAACAAAAAGAAAATAGTATTTACTCACTCAAATAACATAATCAAGAAATAGATCTGATAGAAATGCAAAGAACACTTATTAAAGGGATAATTCACCCAAAAATGAAACTTCTGTCATAATTTACTCACCCTCAAGTTGTTCCAAACCTGTTTGAGTTTCTTTCTTCTGCTGATCACAAAAGACGATATTTTGAAGAATGTCGGTGTATTTTTTTCCATACTATGGAAGTCAGTGGGGACCATCAACTGTTTGGCTACCCATGTTCTTTAAAATGTCTTATTTTGTGTTCAGCAGAAGAAAGAAACTCATATAGGTTTGGAACAAATTGAGGGTGAATAAATGATGACAGAATTTTAATTTAAGTCCTAAACTCATATTTCACTTGAATAGGTGTGATTGATCGTTTATGCTCTAAATGACAGGTTAGAATCTGCTAGTTTTGAATAGATTTTAATGGGAATCTTACAAAGTCGTTAATCATTTTTGCAGCCAGCTGGTGCAGGTGTTGAACACGTATGACTGCGTTGTTGAAGAGCCGCTGGTTCTCTGAGGCCGTCCCCTGGTTCACCAACAAACTAACCAGCACCACCGACAACAGCACTAATGCTAGCCATTTCGCTCAGGGTAGATTCTTACAGTCTTAGTTGAAGGCTTGTGAACGTTTGTTTTCCTGGCTCAGGTATACTGATATTTATATGTGGCATGAACATGTTTTGATGCATCCTAATCAGAAACATGATAGTTTCCTTGCTTTAATATGCATGCTACATGTATTTAGACAAAAACATTAGTGTTGTGGTTCGAGTCATTTATATCAATT
>TU193056
TTTCAGTACCTACGAACGTTCCAAACGTTCTAGAAGCGTTCAAAATAATAAACAACGTAATTTATAAACATTTAAAAATGTAATCTTGTCTCATCATCTTAATATGTAGAGACCTGTAGCACTGCATCGTAGAACAATATTGCTTTAAAAAAATTATTTATTATTTTTGCAAAACTTTTGCATTTTATTTATTAAACTAAAGGTAAAAGTTTAGCCTATTCAGATCCTGGTCATTTTTTTCGGTCCATTTTGAACTCGTTCATTGTGGACGGATGATAGGACTGATTTTGATGAATATCCGAGCAGTGAAAATGTAAGGTACGTGTAATGTTGAGACGGGTAGAAAAAAATAAACCACACAGGTCATACAGCAGACACATTGGATGCAGTTTAGAAATTTAATGGATAAAGACACACAGCTTCAAGAGAACAGCATGAGCTAATAATATGGACATAATCTATCAGACAGACAAATGTTTACATTCATACACTTGGTTGAGAGTGAACCCATCCATCCAAATGACAGTTTCGACAAAAGGCATCTTTAGCCATTTTTGGAGCCATAAAATACTAGAGTCAAAGCGATTTGGGCACATTTGAAAATATATTGCCATATATTGCTTAGCACCACTGTGAAATGTTAAATCAGATCTTAATATCTTTAATTTACGAGCACTCCCCAATGAGAAGAATAAATACAATAGTGTTGGGTTTAGATATGGGAGGGAACTAGAGAACAGACCTAGCCATGCCTGGTTGACATTTCCTGCATATATAAGACCAGATAATAATTATATTAGGAGATTTTGAGGACTTAAATTGGTTTTAGATTTGCAGCAAAGTGTGTCACAGGCTTTGGCTAGCAATACATTGGCGCCATCTACAGGGTGCAGTTTGAATCCAGGGATCTCCTGCAATTCGCAACCCTCAGGTAAGTTTCCACCTTGTGCATGTCCTTCTTGAAGCAAGCCAGAAGACGAAAGCTCTCTCTGAGGCTGCTCTCCCCCATGGTCAAGTAGAAATCCTCAAAAGGCAGTGGCAGGGAGTCGTTATCATCCATGTTTGGTTGACCATCCAGACATCCCTTGAGCACGCTGATGCCCACTTTCAAGTCGGCCAGCTTCTCAGTGATCTGGTTGGGGTTCCCGACGGTCAGACTGTTTGAGACGGCTCCGCTCAGGGTCTGGCTGGGGAACTCCCAGGACTCAATGAGGCGGAAAGAGATGCGAAGGAGCTTCAACAAGAGCTCTTCTGCGTTTCATCTTTTCCAGTGGGCGCCTCAATTGAGTCAGAGTTGCAGAAAGACAGAGGAAAGATTTTACTCAGCTGTCTGCGTTCCTCAGGCAACAGGTTGTCCTACAAAGTCGTTAATCATTTTTGCAGCCAGCTGGTGCAGGTGTTGAACACGTATGACTGCGTTGTTGAAGAGCCGCTGGTTCTCTGAGGCCGTCCCCTGGTTCACCAACAAACTAACCAGCACCACCGACAACAGCACTAATGCTAGGAGAAGAAAAGAAAGAGGTTTGTTTACCATCTACAACATCGTTCCTAATAAAATAACCAATGAAATCAAGATTTTGGATTAATCAAAACAGATTTTGGAGATCAAATACATTTGTTTTGTTTTCCATGCTCCAATAAACTCTTTTACAACTACGAAATTAGTTTTACAAGTAAGAGGAAAGCACAAAAAAACATCTAAACGAAATAAGGAGTTGTCAAAAAGTCTTAAATCCACAAATAACATTCAACAGAAAGCATCATATCCATACCTCTAGCCATTTCGCTCAGGGTAGATTCTTACAGTCTTAGTTGAAGGCTTGTGAACGTTTGTTTTCCTGGCTCAGGTATACTGATATTTATATGTGGCATGAACATGTTTTGATGCATCCTAATCAGAAACATGATAGTTTCCTTGCTTTAATATGCATGCTACATGTATTTAGACAAAAACATTAGTGTTGTGGTTCGAGTCATTTATATCAATT
>TU193059
TTTCAGTACCTACGAACGTTCCAAACGTTCTAGAAGCGTTCAAAATAATAAACAACGTAATTTATAAACATTTAAAAATGTAATCTTGTCTCATCATCTTAATATGTAGAGACCTGTAGCACTGCATCGTAGAACAATATTGCTTTAAAAAAATTATTTATTATTTTTGCAAAACTTTTGCATTTTATTTATTAAACTAAAGGTAAAAGTTTAGCCTATTCAGATCCTGGTCATTTTTTTCGGTCCATTTTGAACTCGTTCATTGTGGACGGATGATAGGACTGATTTTGATGAATATCCGAGCAGTGAAAATGTAAGGTACGTGTAATGTTGAGACGGGTAGAAAAAAATAAACCACACAGGTCATACAGCAGACACATTGGATGCAGTTTAGAAATTTAATGGATAAAGACACACAGCTTCAAGAGAACAGCATGAGCTAATAATATGGACATAATCTATCAGACAGACAAATGTTTACATTCATACACTTGGTTGAGAGTGAACCCATCCATCCAAATGACAGTTTCGACAAAAGGCATCTTTAGCCATTTTTGGAGCCATAAAATACTAGAGTCAAAGCGATTTGGGCACATTTGAAAATATATTGCCATATATTGCTTAGCACCACTGTGAAATGTTAAATCAGATCTTAATATCTTTAATTTACGAGCACTCCCCAATGAGAAGAATAAATACAATAGTGTTGGGTTTAGATATGGGAGGGAACTAGAGAACAGACCTAGCCATGCCTGGTTGACATTTCCTGCATATATAAGACCAGATAATAATTATATTAGGAGATTTTGAGGACTTAAATTGGTTTTAGATTTGCAGCAAAGTGTGTCACAGGCTTTGGCTAGCAATACATTGGCGCCATCTACAGGGTGCAGTTTGAATCCAGGGATCTCCTGCAATTCGCAACCCTCAGGTAAGTTTCCACCTTGTGCATGTCCTTCTTGAAGCAAGCCAGAAGACGAAAGCTCTCTCTGAGGCTGCTCTCCCCCATGGTCAAGTAGAAATCCTCAAAAGGCAGTGGCAGGGAGTCGTTATCATCCATGTTTGGTTGACCATCCAGACATCCTTGATGAGCACGCTGATGCCCACTTTCAAGTCGGCCAGCTTCTCAGTGATCTGGTTGGGGTTCCCGACGGTCAGACTGTTTGAGACGGCTCCGCTCAGGGTCTGGCTGGGGAACTCCCAGGACTCAATGAGGCGGAAAGAGATGCGAAGGAGCTTCAACATCTGAAGAAAGAAAAAATAATACCGGAGGCTTCAGAAAACTAGCCATTTTTGATGCTTATGCTGCCCATGTTTGGTCTGTTTCCCAAACTACACTGTAAAAAAGATTTGTTGGTTTAACTTAAAAAATAAGATACCTGGTTGCCTTAAAATTTTGAGTTCATTGGTGATTGGTTTAATCAACAGAAACTCACAATATTATGTTATCTGAACCACATTAATTAAGTTGATTTGACAAAGGAAAAAATGTGATAATTAGTGAAAATATTTTTTTTTACAGTGTAGTGATGATGGAACTTTTAATCTGATTTTTGAGCAATTGTGAAAACAACAAAAATATTTCACTTGCATCATGCATGTACTATACTACTATTTGTTTCATAGTTCTATATTTTGTTGACTAAAACATAAGAGGTTGGGGTTTCATTTTTAACGACATCGTGTACTTACAGAGCTCTTCTGCGTTTCATCTTTTCCAGTGGGCGCCTCAATTGAGTCAGAGTTGCAGAAAGACAGAGGAAAGATTTTACTCAGCTGTCTGCGTTCCTCAGGCAACAGGTTGTCCTACAAAGTCGTTAATCATTTTTGCAGCCAGCTGGTGCAGGTGTTGAACACGTATGACTGCGTTGTTGAAGAGCCGCTGGTTCTCTGAGGCCGTCCCCTGGTTCACCAACAAACTAACCAGCACCACCGACAACAGCACTACTCTAGCCATTTCGCTCAGGGTAGATTCTTACAGTCTTAGTTGAAGGCTTGTGAACGTTTGTTTTCCTGGCTCAGGTATACTGATATTTATATGTGGCATGAACATGTTTTGATGCATCCTAATCAGAAACATGATAGTTTCCTTGCTTTAATATGCATGCTACATGTATTTAGACAAAAACATTAGTGTTGTGGTTCGAGTCATTTATATCAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU193058 False 1825 lncRNA 0.40 5 2548634 2588029
TU193056 False 1988 lncRNA 0.39 4 2584972 2588029
TU193059 True 2163 lncRNA 0.39 4 2584972 2588029

Neighbor

gene id symbol gene type direction distance location
CI01000034_02421189_02423360 NA coding upstream 125107 2421026 ~ 2423527 (+)
CI01000034_02275470_02281951 CYB561 coding upstream 266030 2274601 ~ 2282604 (+)
CI01000034_02256162_02260170 NA coding upstream 288170 2255765 ~ 2260464 (+)
CI01000034_02231423_02231755 NA coding upstream 316510 2231303 ~ 2232124 (+)
CI01000034_01900645_01947187 RAPGEFL1 coding upstream 601447 1900645 ~ 1947187 (+)
CI01000034_02662209_02664649 MYL4 coding downstream 74180 2662209 ~ 2665540 (+)
CI01000034_02688043_02705526 MAPTB coding downstream 99916 2687945 ~ 2705564 (+)
CI01000034_02770255_02774341 NA coding downstream 182070 2770099 ~ 2774567 (+)
CI01000034_02957414_02963572 NA coding downstream 369066 2957095 ~ 2964031 (+)
CI01000034_03145811_03149071 NA coding downstream 557596 3145625 ~ 3149071 (+)
G169921 NA non-coding upstream 37940 2509779 ~ 2510694 (+)
G169922 NA non-coding upstream 39603 2506645 ~ 2509031 (+)
G169906 NA non-coding upstream 71168 2476276 ~ 2477466 (+)
G169760 NA non-coding upstream 244536 2235008 ~ 2304098 (+)
G169768 NA non-coding upstream 288830 2243834 ~ 2259804 (+)
G169946 NA non-coding downstream 911 2588940 ~ 2589235 (+)
G169947 NA non-coding downstream 2332 2590361 ~ 2590615 (+)
G169974 NA non-coding downstream 67167 2655196 ~ 2658101 (+)
G169996 NA non-coding downstream 79132 2667161 ~ 2667374 (+)
G169983 NA non-coding downstream 122269 2710298 ~ 2718282 (+)
G169806 NA other upstream 210944 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 817457 1729413 ~ 1731179 (+)
G169340 NA other upstream 1237756 1250219 ~ 1310878 (+)
G169394 NA other upstream 1355074 1150297 ~ 1193560 (+)
G169357 NA other upstream 1429615 1053543 ~ 1119019 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 846107 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 1537071 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 1606609 4192311 ~ 4200636 (+)

Expression


Co-expression Network