G172022


Basic Information

Item Value
gene id G172022
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3151881 ~ 3171535 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195436
AGTCAACAAGCATTATTTATTAAGTATATGCATAATGAATTTCTCTGATGAATGTGACTATTTACATTGGTTTTATGACTTAATGTTCATAGCCAGTTGTACAGCTCAGTGATCTCTACTGATAATCAAAATGGACTATCACCTTCCTGAAATACTAAGAATGTTAACAAGAGCAATGGGTTGGAGACAATGTTTTTTTTTTTTTACATCTATTTGAATTTTTTTAATATCTTACTGACCTCACATCTTTGAATGATAGTGTATAATAAAACCATTTTAACAATAATTTACTATAAAAGACAATTGTCTTGTTAAATATAAATGATTTTCCACTGTAAATTATAAGGTAATTTATATTCTTTACTGTAAAAATATATAATTTTACAGTATAGTAAGTACAGTCAAATCTTAAATCTAAGACATTATAAAAGTCTTTCTTTACTGTCACATTTGATTGATTTAATACATCCTTGCTGAACAAAAGTATTCATTAAAAAAAAAAAAAAAAAAAAAAAAATCTGACCCCAAACATTTGAACATTAGTGTAGCCTACAAATAATAGACACTATTGAGAACAATTTAAATACAATTTTACTGGTTTATATCCTGTATTACAGATCAAATAACCACAGATACAAGTTTAACCTGGGTGCCACTAATCGCCTTCATGATTTGCAGAGGCACTGTTGCAGCGTTTATTATTTTGACAGAGCCTGCAGTGTGCAGATCGTTTGGGACCCCAACGACATAATCTGGGATGCGGTCTTCATTAAACTGCCCAGAAGCAACAGAGTATCCCAGATACAGGTCGTAGTAGTCAAGTCTTTGTGGTGTTTTGGTCTCACCGCTCACTGAGTGCTTGGGAGAGAACGTGCTGCCACTTCTCATGATGTTTGCAAGAGATGCAGTGATGATATGACCTTGAAAATAATAGCCTCCTGGTGCACCAAGTATCACTCTGCCATTCTCTGTGATGTCTGTGGTAAATCCAGCCTCACAGTAACGCCTGTCAGGATAGCCTCTGGTGTAAATCGACTCTACATATTCTTCCCTGCAGGGGGCGTAGTTTGCCAACTCTCCTGTTTGCATGTTCAAAAGCTGGCAGTTCCCAACAGGTGTATTCATGGCCTCCTCTTTTTCCAAAAGCACGTTCCAGTGAAACATAGGGGCACAGGCCAAGATGAAGTTGTTGTAGGTTCGAACTGAAGCGCCCAGCCACTGGTTTGATTTGTGAGCCATTAGGAGCATGTTACCAAACGTGATGTTTTCATCACTTTTTGGTCAAAGTTTAATGTCTGACACGATTCTCCGCTTGATGTCCAGGGACACATGAAGACAGAGCCGCCATGAGAGATCCCAGGCTGGCTGGTGTTTGCTCTGGGTGCTCCAACCACCACACTTATACTTTTGCTGCTTGACTGATAAAAGTCGACTGAGAAACCAAAGTAGCTGTCCTCAGGGCCAGAGAAGACGGTGTATTTGTTCAGATCCAGGTTAAAGCCACTGATGTGATTTGGATACATGAATATGAACAAATATCCAGTAAAAAACAGCAGACTGACTTCCAGCCTTTTCTCCATGTTCTGTGAGATTTTTTGAGTCGTCCAAAGTCGTTCTACACAATTCTGTCTGCCACTAGGAAGAAGTTATTCTGTCCCTTTGGGAGAGGTCTGTAC
>TU195437
AGTCAACAAGCATTATTTATTAAGTATATGCATAATGAATTTCTCTGATGAATGTGACTATTTACATTGGTTTTATGACTTAATGTTCATAGCCAGTTGTACAGCTCAGTGATCTCTACTGATAATCAAAATGGACTATCACCTTCCTGAAATACTAAGAATGTTAACAAGAGCAATGGGTTGGAGACAATGCTATTTTTTTTATCTACTTCTATTTCTGCCTAAAGCTATATGCAGGGATGCAAACAGGTAAGAGGGAAAAAAGGTGAGAACATTGCGTGGGGTGGGGGCATGCTTTGCACGATATGATATATATATATATTTTTTTTAAATTTGCTTTACATGCTCATTTGTAGTTACTTTAAGGGATTTTTAATTTATTTTTAATACCGTATATATCCAAAACTGTAATGCAGGATATTTAAGACAATATTGGCTGATTAGATGGCAATATTGAGCTAAACTGCAAACTGTTTGCCCTCTCTCTCTTTACCATTCCCACATCTCAGACCTCAAATCCATAAAATATTCCCTGTTAAAGACATTAGTTTTTAAAGTAAGAGTAAAGGAAACAATGTACAGTACTCATTGAAACAACCAAGTACCCTTGTAAGACCCCCCACCCCCACCCCCATAAAACACTTTTACATTGGATCTATGCAAATCCCATAAGTGACCTATTTTGATCTCAAAAATGTGAGTTGTCACTGAAAGGTGAGGAGTTTGGTTACCTAATGCCTGCAACTCCATATAAACCACCATGATACATATTTAATAAAACTGCAGAAAGTATTTAATATAATATAGCAAACAAAGTTTAAAAAGCTTTAAAACATCATAAATCTCAAGATTTGCAGTCTGACATCTCGTTCTGGTCACCATTCAGGTGCTGCGTGTCATCACCATCATCGTCACTTGGAGGACGGTTACGCTTGAAAAATCCCACCTTCCAGAAGATTGTACTCAGGGCAGCCAGTAGAAGGAGCCCAGCGATGACTGACACTACTATCCACCAAACAGGAACCTCCTCTTGTCCATCTGGGCGTCTCCACACTATATTTGTGTGTCTGTGCTTTTCCTCTGGGCAAGACAACTGGCTGGATTTTTGAGGGCACATCTTTCACCTCATAGTGAGCCGTGGAGTGAAGAACGTAATTTACATATGGTCTCTTTAAGAAGGTTTGTACCCACAGCCTACTCATCACTCTTACAATGGCCCTCTCATCTCTCTGCAGTCCCGCAGCCTCACACTCAAACAGAAGACATTGGTCACCACTAGAGCAGTTCACATGGACAGTATGTTGCCACTGCTGCTCATATTCTGTTTTTTGCGACAGGTCGCGTTTGTTGAAATGATGAACTTGGCCTATGGTGACGTTGGAGGACTCCAGCTTCACCAACCCACGTGGGTCGATGTTGGAGTAGTCTGTTTGACAGGAGATGAGTTCTTGGGAGGCATTAGCAAACACATACAGCAGATAGGACTCATTTTGTGAGACAGGAAACTCCAGTGTAAGCTTTGCATTGACCGGACTAGGACCCATGTTTCTTAGCTCATATACATGCTCTACGAGTGGGCCTACTTCATTTATGTCTTCTGGATAATCCTTTG
>TU195438
AGTCAACAAGCATTATTTATTAAGTATATGCATAATGAATTTCTCTGATGAATGTGACTATTTACATTGGTTTTATGACTTAATGTTCATAGCCAGTTGTACAGCTCAGTGATCTCTACTGATAATCAAAATGGACTATCACCTTCCTGAAATACTAAGAATGTTAACAAGAGCAATGGGTTGGAGACAATGCTATTTTTTTTATCTACTTCTATTTCTGCCTAAAGCTATATGCAGGGATGCAAACAGGTAAGAGGGAAAAAAGGTGAGAACATTGCGTGGGGTGGGGGCATGCTTTGCACGATATGATATATATATATATTTTTTTTAAATTTGCTTTACATGCTCATTTGTAGTTACTTTAAGGGATTTTTAATTTATTTTTAATACCGTATATATCCAAAACTGTAATGCAGGATATTTAAGACAATATTGGCTGATTAGATGGCAATATTGAGCTAAACTGCAAACTGTTTGCCCTCTCTCTCTTTACCATTCCCACATCTCAGACCTCAAATCCATAAAATATTCCCTGTTAAAGACATTAGTTTTTAAAGTAAGAGTAAAGGAAACAATGTACAGTACTCATTGAAACAACCAAGTACCCTTGTAAGACCCCCCACCCCCACCCCCATAAAACACTTTTACATTGGATCTATGCAAATCCCATAAGTGACCTATTTTGATCTCAAAAATGTGAGTTGTCACTGAAAGGTGAGGAGTTTGGTTACCTAATGCCTGCAACTCCATATAAACCACCATGATACATATTTAATAAAACTGCAGAAAGTATTTAATATAATATAGCAAACAAAGTTTAAAAAGCTTTAAAACATCATAAATCTCAAGATTTGCAGTCTGACATCTCGTTCTGGTCACCATTCAGGTGCTGCGTGTCATCACCATCATCGTCACTTGGAGGACGGTTACGCTTGAAAAATCCCACCTTAAAACTTCCAGAAGATTGTACTCAGGGCAGCCAGTAGAAGGAGCCCAGCGATGACTGACACTACTATCCACCAAACAGGAACCTCCTCTTGTCCATCTGGGCGTCTCCACACTATATTTGTGTGTGTCTAAATAGTTTTTATGAGGAGATTTAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195436 False 1676 lncRNA 0.38 11 3151881 3171535
TU195437 False 1612 lncRNA 0.40 7 3167319 3171535
TU195438 True 1105 lncRNA 0.36 2 3170318 3171535

Neighbor

gene id symbol gene type direction distance location
CI01000034_02875948_02953386 CRHR2, CRHR1 coding downstream 197361 2875658 ~ 2954520 (-)
CI01000034_02778206_02786310 CDC27 coding downstream 365571 2777700 ~ 2786310 (-)
CI01000034_02712912_02755978 KANSL1B coding downstream 395903 2712687 ~ 2755978 (-)
CI01000034_02673701_02680445 NA coding downstream 471128 2673521 ~ 2680753 (-)
CI01000034_02596578_02625089 SCN4AB coding downstream 526474 2596169 ~ 2625407 (-)
CI01000034_03247806_03248810 NA coding upstream 76259 3247794 ~ 3248947 (-)
CI01000034_03250695_03253982 NA coding upstream 78867 3250402 ~ 3254202 (-)
CI01000034_03255619_03266388 NA coding upstream 83733 3255268 ~ 3267690 (-)
CI01000034_03285980_03289258 NA coding upstream 114255 3285790 ~ 3289258 (-)
CI01000034_03577874_03611044 NA coding upstream 405919 3577454 ~ 3611099 (-)
G172048 NA non-coding downstream 7049 3144604 ~ 3144832 (-)
G171960 NA non-coding downstream 306260 2845229 ~ 2845621 (-)
G171947 NA non-coding downstream 352692 2798911 ~ 2799189 (-)
G171946 NA non-coding downstream 356437 2795158 ~ 2795444 (-)
G171927 NA non-coding downstream 375497 2775940 ~ 2776384 (-)
G172031 NA non-coding upstream 18377 3189912 ~ 3190509 (-)
G172020 NA non-coding upstream 39171 3210706 ~ 3214094 (-)
G172025 NA non-coding upstream 55824 3227359 ~ 3231997 (-)
G172019 NA non-coding upstream 61984 3233519 ~ 3233712 (-)
G172016 NA non-coding upstream 63428 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 640360 2510061 ~ 2511521 (-)
G171835 NA other downstream 705588 2441821 ~ 2446293 (-)
G171755 NA other downstream 1285508 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 1833627 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 2074659 1062444 ~ 1083413 (-)
G172151 NA other upstream 219978 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 994964 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 1044677 4216212 ~ 4221881 (-)
G172593 NA other upstream 1821425 4992960 ~ 4994943 (-)

Expression


Co-expression Network