Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_009038 |
| gene name | tenm4 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 10000553 ~ 10455569 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| tenm4 | Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within axon guidance. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be active in neuron projection. Is expressed in several structures, including brain; midbrain hindbrain boundary neural rod; neural tube; optic vesicle; and retina. Human ortholog(s) of this gene implicated in essential tremor 5. Orthologous to human TENM4 (teneurin transmembrane protein 4). |
| id | name | namespace |
|---|---|---|
| GO:0032289 | central nervous system myelin formation | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0010976 | positive regulation of neuron projection development | biological_process |
| GO:2000543 | positive regulation of gastrulation | biological_process |
| GO:0031641 | regulation of myelination | biological_process |
| GO:0031643 | positive regulation of myelination | biological_process |
| GO:0048666 | neuron development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules | biological_process |
| GO:0048714 | positive regulation of oligodendrocyte differentiation | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0050839 | cell adhesion molecule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990714-20 | Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within axon guidance. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be active in neuron projection. Is expressed in several structures, including brain; midbrain hindbrain boundary neural rod; neural tube; optic vesicle; and retina. Human ortholog(s) of this gene implicated in essential tremor 5. Orthologous to human TENM4 (teneurin transmembrane protein 4). |
| ensembl_id | ENSDARG00000105088 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00017814 | False | 12537 | mRNA | 0.48 | 33 | 10000553 | 10455569 |
| TCONS_00017816 | False | 12462 | mRNA | 0.48 | 32 | 10000553 | 10455569 |
| TCONS_00017817 | False | 12318 | mRNA | 0.48 | 32 | 10000553 | 10455569 |
| TCONS_00017815 | False | 12336 | mRNA | 0.48 | 30 | 10000553 | 10455569 |
| TCONS_00017813 | False | 12414 | mRNA | 0.48 | 30 | 10000553 | 10455569 |
| TCONS_00017812 | False | 12435 | mRNA | 0.48 | 31 | 10000553 | 10455569 |
| TCONS_00017818 | False | 9523 | mRNA | 0.51 | 28 | 10002808 | 10341048 |
| TCONS_00018812 | False | 567 | lncRNA | 0.36 | 2 | 10446657 | 10448625 |
| TCONS_00017820 | True | 534 | mRNA | 0.46 | 2 | 10446855 | 10455438 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_009037 | nars2 | coding | downstream | 368961 | 9601637 ~ 9631592 (-) |
| XLOC_009036 | gab2 | coding | downstream | 407021 | 9444982 ~ 9593532 (-) |
| XLOC_009035 | sacs | coding | downstream | 579072 | 9367101 ~ 9421481 (-) |
| XLOC_009034 | trappc4 | coding | downstream | 678583 | 9315177 ~ 9321970 (-) |
| XLOC_009033 | si:ch211-261a10.5 | coding | downstream | 705624 | 9278992 ~ 9294929 (-) |
| XLOC_009040 | CT573316.3 | coding | upstream | 300641 | 10756210 ~ 10759101 (-) |
| XLOC_009041 | BX293559.2 | coding | upstream | 518148 | 10973717 ~ 10986106 (-) |
| XLOC_009042 | BX293559.1 | coding | upstream | 642300 | 11097869 ~ 11099720 (-) |
| XLOC_009043 | prcp | coding | upstream | 762677 | 11218246 ~ 11303691 (-) |
| XLOC_009044 | rab30 | coding | upstream | 852893 | 11308462 ~ 11341635 (-) |
| XLOC_009031 | NA | non-coding | downstream | 809276 | 9189153 ~ 9191277 (-) |
| XLOC_009028 | CR847977.1 | non-coding | downstream | 1012794 | 8987643 ~ 8987759 (-) |
| XLOC_009025 | NA | non-coding | downstream | 1398459 | 8599591 ~ 8602094 (-) |
| XLOC_009023 | NA | non-coding | downstream | 1605952 | 8350029 ~ 8394601 (-) |
| XLOC_009017 | NA | non-coding | downstream | 2935240 | 7064468 ~ 7065313 (-) |
| XLOC_009045 | NA | non-coding | upstream | 959122 | 11414691 ~ 11423104 (-) |
| XLOC_009047 | NA | non-coding | upstream | 1362915 | 11818484 ~ 11825881 (-) |
