G172020


Basic Information

Item Value
gene id G172020
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3210706 ~ 3214094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195433
AACTTCTGTAATAACGTAGGAACATCACTAAAAATATCTATATACAATTTGCTGGAAGTTGAGGGCACTTGTGAAAATTCAGAAGTTCGTTTGAAGAGGAATGGTGAGAGACTTCTGTCGGTACATGGTAAGTTCTCGTTCAGTTTTAGAAATAACAAATTCAATGGTAATTGGCTAATGCTTCACATGTTATGAGGGCAAGACATAAAGTCAGTATTACAATAAAATGTCAACTGCTGAACGGAAAAGACAGGTACAGTGTGATATGAATTTGGCCAGTAACTAATGGCCGAAGGTGTTTAGTAATCAGACAAAAATAAAAATGCACAGAACCAAAATGAGGGTGTAAATTTACTAAGGTGTTATTTACAAATAAGTGGTTCATAGAGTTTAATAAGAGTGCTAAATAAGCAATACTTGCTTTAAAAAAATACTTGACAATTTTTTTTTTTTTTTTTTTGTGTAAATTCATCCATGTACATCTTCAGTCACACAAAAACTCCAATAAAAATGTTCATATTTTTACTTCCACAGTTAACAGAGTTGCAGTGGTTATGATTTATGGCAAAAATTCTGATGCACTGCAGCAAAGATTAGTACGAAAACATATTTTCACAAGTGTCCAAAGCAAGTCCCTCAAAACACAATTCCTGTTGCTGCACTGACCCAACAGGAAGGCTTATTCAGAGTACAAAATGCGTTCTGTATATAAGCAGAACCTTTTATTCATATCTAAAAGCAGCTTTCCTAGCCCAAACAGTCTCCCTAAACATATATATATATATTTAAAAATGGGGAACTTTTACCAACAGTACAAAATACAGTGTCATTATGTGTCAACCACTAGGATAAGTCACATTGGAATAAACACAAATTTATTCAGCATCCATTTCATCCCTTTCTGTGAAATGCACGATTTCCACACATCTTAATGGTTCAGGTCTACATAGTCATATAAACAAATTAAATGTTTGCGTAAACCACTACAATAAAAGCCATCTAAACTGATAAAATCTCTGAATCCTTACAACAGCCCCCTTTTTCATCAATATCAAATTTATATTCATTTTTATTCATATTTCTTATGAAAAGAAAAAAGCTCTTTAAGGCTTATGGATTGCTTCCCAACGTCAGTTCTAAAATGGCTCATGGTAATTCTTACGAAAAACGGGCATCACTTAAGGAAAGCGAGACAACATCTTGAGTGCAGATTCAAAGTTACAGCTCCCTCTGGCTTCATGAGCTGCTGCTAGAACTACATCAGATGTCTAAACCATCTGAAGGACATCCAAGAGAGTGTGAGGGCTTCAGACGCTTCTTTACAAGCGGCATTCAGTGCTAATTCTTGGTACCTAGTCTTGACTGTTGGAACAGATACCGCACTCAGGTAAGTGCCATGTGTCTTGTGCTTTTCATCCGACTTTTTTTCCAGCTCTGCATCTTTACACCTCATCACTACTGAGCATCTATGCAAAAGAAGGGTATAGCCAAGATGGTGCCATAACCAGTCCTGGACAGCATGTGAGTTACTTGACGTTGAACACCATGAGGGGCCTCTCTTCACGCTTTTGCCAGGGGCTCTTCTTATTCTCGCCGTCTTCATCTTTGTCATCGGCTTCATTGTCATCATCAGGACTGGTGACAGAGTCTCTGTGGACCTCGCTGGCACTACTGCGGGTGCTATTGTCACGACTGCGGCCTTTACGAGGAAACGTCCCACCTCTGGACTCCGAGGTCTCGTCAAGCAGTGGCGCTGTGGAGTTCTCCTCAGGTGAGTACATGGCTGAATGGCACTCACTGCTTGAGTCTGGCGTTTCGATAACGGGAAGTTTGGAATAAATCTTTCCGTGAGCTTTTCTTTCACCCCCCTCCTTCACCTTGCCCTCCTCTTTTGCTTTTCGTTGAGTAGATTTCCCTGAACTCACTGGGAGTGTTTCAGTACGGCGGTCCTGGGCTAGACTGCTGGGGCCCACGGGTGCACGCATGGCTTCATTGCCCAGCTCAATGTAGGAGTGTCTAACAAGAGAGTTTGAACGACCATCAAGGGAAACAAACCAGGCACGAGGGTGCGGCTTTACCCCAAGCTCCAGCAGCTTCTTCTCTGTCATTGCTTGCAACTCTCCATTCATTTGTGCAATAGTGGAGTCATTGAAAAGGACAGGAATACGGACTGGGGCAGTGGATTGTTCCGATCCCCAGTTCTCCTCTGAAGGTCCTTCTGCTTGCTGGCTAGACTCTTCCTCTTCCTTTTCTTGCCTGGTCTGCTGCTGCTGTTGCTTTTGTTGTTGACTCTGTTGCCGTGGCAGTGTCATGCTAACCTGGATGCCCTCCATATCATGCTGCAGCTGTTGCTGCCTTTCCACTGCCTGCTCCACAGCTGACAGGTCAGGGGACATATGCATGTAATGTGCAGGGATGACCAATGTGGGTACCATGCTGTGGTACATGCTCTCCTTCATCTGTTCCATGGAGTGACAGAAGATCAGCTGGCCAGGCTGGGTGTTGACAGAACTGGGCCGCGTGAGGTGATCCCCTGCCGATGCAAAATACTCCGGTGGTTTGCTGTCCCGACTGTGATCCTGATAGTGACCAGCAAACGGTGGCAAAAGTGGAGGTGGAGAAGGTGGGTCTGACGAATAGCCCTGGTTTTCTTTAGCATTATGGTGATGGTATCTGCGCTCATCGGAGTCCTCAGCAGAGCTGTAACCTTTGCTATAGTCGTCCTGTAGGAGCGGGTCTCGAGTTCCTGTGTTTGAAGAGCGAGTGGCCTTCAATGGGAAGCTCTCTCCTCGCTTTGTGTCAGCATTCATCCTAGAGTTGTGCAGTCTCTGTGTGGGGCCATGTCTGAAGAAGTCCTCTCGAGAGCTGTGGAGATCACGGTTGGAGGAAATGTCAGATTTGATGCCGTCATGGTCACCGGCCGAGGAGGCTGTCTCCACGTGTCCACCGCTGATGAGATTGAGGTGGGAAGTGGATGTACCCTGGTCTCTCTTTGAACTCTCCAGAGTGGAGGAGAAGTGCATTTTTCGACGATGCTGCCGAGGTTTCAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195433 True 3053 lncRNA 0.44 3 3210706 3214094

Neighbor

gene id symbol gene type direction distance location
CI01000034_02875948_02953386 CRHR2, CRHR1 coding downstream 256186 2875658 ~ 2954520 (-)
CI01000034_02778206_02786310 CDC27 coding downstream 424396 2777700 ~ 2786310 (-)
CI01000034_02712912_02755978 KANSL1B coding downstream 454728 2712687 ~ 2755978 (-)
CI01000034_02673701_02680445 NA coding downstream 529953 2673521 ~ 2680753 (-)
CI01000034_02596578_02625089 SCN4AB coding downstream 585299 2596169 ~ 2625407 (-)
CI01000034_03247806_03248810 NA coding upstream 33700 3247794 ~ 3248947 (-)
CI01000034_03250695_03253982 NA coding upstream 36308 3250402 ~ 3254202 (-)
CI01000034_03255619_03266388 NA coding upstream 41174 3255268 ~ 3267690 (-)
CI01000034_03285980_03289258 NA coding upstream 71696 3285790 ~ 3289258 (-)
CI01000034_03577874_03611044 NA coding upstream 363360 3577454 ~ 3611099 (-)
G172031 NA non-coding downstream 20197 3189912 ~ 3190509 (-)
G172022 NA non-coding downstream 39171 3151881 ~ 3171535 (-)
G172048 NA non-coding downstream 65874 3144604 ~ 3144832 (-)
G171960 NA non-coding downstream 365085 2845229 ~ 2845621 (-)
G171947 NA non-coding downstream 411517 2798911 ~ 2799189 (-)
G172025 NA non-coding upstream 13265 3227359 ~ 3231997 (-)
G172019 NA non-coding upstream 19425 3233519 ~ 3233712 (-)
G172016 NA non-coding upstream 20869 3234963 ~ 3236615 (-)
G172088 NA non-coding upstream 47739 3261833 ~ 3262036 (-)
G172090 NA non-coding upstream 50349 3264443 ~ 3264665 (-)
CI01000034_02510595_02511512 NA other downstream 699185 2510061 ~ 2511521 (-)
G171835 NA other downstream 764413 2441821 ~ 2446293 (-)
G171755 NA other downstream 1344333 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 1892452 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 2133484 1062444 ~ 1083413 (-)
G172151 NA other upstream 177419 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 952405 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 1002118 4216212 ~ 4221881 (-)
G172593 NA other upstream 1778866 4992960 ~ 4994943 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location