Item | Value |
---|---|
gene id | G172025 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000034 |
NCBI id | null |
chromosome length | 5914002 |
location | 3227359 ~ 3231997 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU195441 | True | 4298 | lncRNA | 0.36 | 2 | 3227359 | 3231997 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000034_02875948_02953386 | CRHR2, CRHR1 | coding | downstream | 272839 | 2875658 ~ 2954520 (-) |
CI01000034_02778206_02786310 | CDC27 | coding | downstream | 441049 | 2777700 ~ 2786310 (-) |
CI01000034_02712912_02755978 | KANSL1B | coding | downstream | 471381 | 2712687 ~ 2755978 (-) |
CI01000034_02673701_02680445 | NA | coding | downstream | 546606 | 2673521 ~ 2680753 (-) |
CI01000034_02596578_02625089 | SCN4AB | coding | downstream | 601952 | 2596169 ~ 2625407 (-) |
CI01000034_03247806_03248810 | NA | coding | upstream | 15797 | 3247794 ~ 3248947 (-) |
CI01000034_03250695_03253982 | NA | coding | upstream | 18405 | 3250402 ~ 3254202 (-) |
CI01000034_03255619_03266388 | NA | coding | upstream | 23271 | 3255268 ~ 3267690 (-) |
CI01000034_03285980_03289258 | NA | coding | upstream | 53793 | 3285790 ~ 3289258 (-) |
CI01000034_03577874_03611044 | NA | coding | upstream | 345457 | 3577454 ~ 3611099 (-) |
G172020 | NA | non-coding | downstream | 13265 | 3210706 ~ 3214094 (-) |
G172031 | NA | non-coding | downstream | 36850 | 3189912 ~ 3190509 (-) |
G172022 | NA | non-coding | downstream | 55824 | 3151881 ~ 3171535 (-) |
G172048 | NA | non-coding | downstream | 82527 | 3144604 ~ 3144832 (-) |
G171960 | NA | non-coding | downstream | 381738 | 2845229 ~ 2845621 (-) |
G172019 | NA | non-coding | upstream | 1522 | 3233519 ~ 3233712 (-) |
G172016 | NA | non-coding | upstream | 2966 | 3234963 ~ 3236615 (-) |
G172088 | NA | non-coding | upstream | 29836 | 3261833 ~ 3262036 (-) |
G172090 | NA | non-coding | upstream | 32446 | 3264443 ~ 3264665 (-) |
G172092 | NA | non-coding | upstream | 33476 | 3265473 ~ 3265763 (-) |
CI01000034_02510595_02511512 | NA | other | downstream | 715838 | 2510061 ~ 2511521 (-) |
G171835 | NA | other | downstream | 781066 | 2441821 ~ 2446293 (-) |
G171755 | NA | other | downstream | 1360986 | 1864118 ~ 1866373 (-) |
CI01000034_01312431_01312780 | PRR15LA | other | downstream | 1909105 | 1311529 ~ 1312780 (-) |
CI01000034_01062505_01083413 | NA | other | downstream | 2150137 | 1062444 ~ 1083413 (-) |
G172151 | NA | other | upstream | 159516 | 3391144 ~ 3451802 (-) |
CI01000034_04165535_04172272 | KCTD13 | other | upstream | 934502 | 4165373 ~ 4172272 (-) |
CI01000034_04216451_04218876 | NA | other | upstream | 984215 | 4216212 ~ 4221881 (-) |
G172593 | NA | other | upstream | 1760963 | 4992960 ~ 4994943 (-) |