G172021


Basic Information

Item Value
gene id G172021
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3328810 ~ 3330494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195434
TTAATCATTTTCTGTACAAGTTCTATAGCCCATGTGTTAAAGAGATCTCCTGTAATCATTTCACCTGAATGTAATTTGGCCTTTTTTCTGAGCTCCCTGAACAACCATGCTCTCCATCAGCCTTTCAAACATCTCAACTTTGCAATACATTTCAGCACAGGCTGCACACACTTTTCCACACATCTGCAACCGCAGTTGCATTATAGCTCCAGTCCTTCGAACACTGCAGGATGATGACAGTAATTTCATACATTTACCTCAAGTTTCTACCACCAGATACTGAAACACCCCCTAAAAGAGGATACACTAATAAGAATCCAGCATGTGTTGCTGTAAACACATTACATGATAGCCCAGAGTTACAGATGGGCTGAGGATTGATTTTTTCCTCTTCTGTCCATAGATCTTAGTAACCAAGTAAGGAAGGACATAAGGGAATGAAGTGAACACTGAAAACGGAGCGAGAAGTGATTGGCCAGGCACCGGGAAGTGAGGTACTGCACGTCTCCTTGGTTCAGGAGGCCGAGGGAGAGTCCGAGTGAACGCTGGTGTCTAAAGAGGGCTGGCAGTGTGGGAGCACAGAAGATTTCGGTTTTCCCAAAGGGGAAAAAAAAAAAAAACATTACTGGCAAAATCTAGCTTCATCATTCACCACGTTCTTAAGGGTATGCTGGAGATTTTGGTTGTCAATGTAAACATCTTGTGTTGCCTTGTACATAAAATGTTAGTATGCAAAAACAAAAGTAATGCATTCCAGAAAATAAGATGGAGGGAGAAAAGCCTGCTGGATCAGAGGGGGGTGTTTGAGACACTTTACAGTCGTCTAGAAATGTTCTATACAGCTAAAATCTCTTAAAATGTTCTGTACAAGTTTAATACTGGCTCTAAAATACTACCTTCCTGACGACGCACTGCACAATAGACTCAAAATTCTCACTGTGACACTGCCAACATTTCCCACCTAGTGGTAAGCATTGATTAAAAAAAAGTCTTAAAAAAGAAAAAGAAAAATTGCAAAAAGAAAAATTAGTGTACAACACAAATATTACAGCGGCAGTAGTAGGTGTAATAATAATGACAGTATCTATTTTTTATGTCCCACTTTCCAATTCACATAGCAAAATTATTATTACCCTAAATAAGAGTTAGTGCTTGTATATACACATGTTGTATAAGTACAATATAGATCAAAAGTGTTGAACAGGAAACAATCAGACGACTTTCCCCGTCAAACCTTCCACAGGTGATGTATTATACACATATATATACTCAGTCATATAAACGTCTGTTGTGTATGTATGTATACAAATGGTCTCTGTACATCAGTCTTGTGCACAGAAACTTGTAACCCAATTCTCTTATGGACATGTACATTATATTTACACAGTGTGCATTATAGAGTCAAGGAGATGGCTTATTCACCTAGCCAGGTTCAATCTCTTTTTAAAAGTAATCTTATCAAGCCTACGTTAAAAACAGACACTGAATTACAGCCCAGTTTAAACCAACTGCAACTTAAATGGCAGCTTGCCCTTATAAGGACAGTGGGCGGAGTTGCTTTAGGTCAGCTGAGCCTCTAGATGGCAGTATGACATGTGGCATTGTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195434 True 1610 lncRNA 0.39 2 3328810 3330494

Neighbor

gene id symbol gene type direction distance location
CI01000034_03285980_03289258 NA coding downstream 39552 3285790 ~ 3289258 (-)
CI01000034_03255619_03266388 NA coding downstream 61120 3255268 ~ 3267690 (-)
CI01000034_03250695_03253982 NA coding downstream 74608 3250402 ~ 3254202 (-)
CI01000034_03247806_03248810 NA coding downstream 79863 3247794 ~ 3248947 (-)
CI01000034_02875948_02953386 CRHR2, CRHR1 coding downstream 374290 2875658 ~ 2954520 (-)
CI01000034_03577874_03611044 NA coding upstream 246960 3577454 ~ 3611099 (-)
CI01000034_03659420_03661699 NXPH3 coding upstream 328796 3659290 ~ 3661699 (-)
CI01000034_03803160_03827982 NGFRA coding upstream 472338 3802832 ~ 3827982 (-)
CI01000034_03911480_03913846 TMUB2 coding upstream 580581 3911075 ~ 3913846 (-)
CI01000034_03915853_03921269 ASB16 coding upstream 585257 3915751 ~ 3921269 (-)
G172030 NA non-coding downstream 3599 3324484 ~ 3325211 (-)
G172122 NA non-coding downstream 24547 3304027 ~ 3304263 (-)
G172092 NA non-coding downstream 63047 3265473 ~ 3265763 (-)
G172090 NA non-coding downstream 64145 3264443 ~ 3264665 (-)
G172088 NA non-coding downstream 66774 3261833 ~ 3262036 (-)
G172147 NA non-coding upstream 57138 3387632 ~ 3387869 (-)
G172148 NA non-coding upstream 57508 3388002 ~ 3388238 (-)
G172149 NA non-coding upstream 57993 3388487 ~ 3388774 (-)
G172151 NA non-coding upstream 60650 3391144 ~ 3451802 (-)
G172170 NA non-coding upstream 156220 3486714 ~ 3486924 (-)
G172016 NA other downstream 92195 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 817289 2510061 ~ 2511521 (-)
G171835 NA other downstream 882517 2441821 ~ 2446293 (-)
G171755 NA other downstream 1462437 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 2010556 1311529 ~ 1312780 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 836005 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 885718 4216212 ~ 4221881 (-)
G172593 NA other upstream 1662466 4992960 ~ 4994943 (-)
G172800 NA other upstream 2458538 5789032 ~ 5789738 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G24361 NA non-coding NC_053113.1 CM020910.1 46962918 ~ 47007827 (-)
tiger barb (Puntius tetrazona) G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 unknown NC_056701.1 CM032070.1 21295702 ~ 21414286 (+)