Gene
RNA
| Item | Value |
|---|---|
| gene id | G172151 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 3391144 ~ 3451802 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU195590 | False | 2750 | lncRNA | 0.43 | 2 | 3391144 | 3397813 |
| TU195593 | False | 2507 | lncRNA | 0.43 | 2 | 3391387 | 3397813 |
| TU195584 | False | 4419 | TUCP | 0.43 | 2 | 3391513 | 3397813 |
| TU195571 | False | 4339 | TUCP | 0.43 | 2 | 3391689 | 3397648 |
| TU195575 | False | 2040 | lncRNA | 0.42 | 2 | 3391689 | 3397648 |
| TU195583 | False | 2205 | lncRNA | 0.42 | 2 | 3391689 | 3397813 |
| TU195589 | False | 1526 | lncRNA | 0.39 | 2 | 3391689 | 3451802 |
| TU195573 | False | 4266 | TUCP | 0.43 | 2 | 3391762 | 3397648 |
| TU195574 | False | 1967 | lncRNA | 0.42 | 2 | 3391762 | 3397648 |
| TU195577 | False | 4001 | TUCP | 0.43 | 2 | 3391762 | 3397648 |
| TU195579 | False | 5760 | lncRNA | 0.42 | 2 | 3391762 | 3397648 |
| TU195581 | True | 1453 | lncRNA | 0.39 | 2 | 3391762 | 3451802 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_03285980_03289258 | NA | coding | downstream | 101886 | 3285790 ~ 3289258 (-) |
| CI01000034_03255619_03266388 | NA | coding | downstream | 123454 | 3255268 ~ 3267690 (-) |
| CI01000034_03250695_03253982 | NA | coding | downstream | 136942 | 3250402 ~ 3254202 (-) |
| CI01000034_03247806_03248810 | NA | coding | downstream | 142197 | 3247794 ~ 3248947 (-) |
| CI01000034_02875948_02953386 | CRHR2, CRHR1 | coding | downstream | 436624 | 2875658 ~ 2954520 (-) |
| CI01000034_03577874_03611044 | NA | coding | upstream | 125652 | 3577454 ~ 3611099 (-) |
| CI01000034_03659420_03661699 | NXPH3 | coding | upstream | 207488 | 3659290 ~ 3661699 (-) |
| CI01000034_03803160_03827982 | NGFRA | coding | upstream | 351030 | 3802832 ~ 3827982 (-) |
| CI01000034_03911480_03913846 | TMUB2 | coding | upstream | 459273 | 3911075 ~ 3913846 (-) |
| CI01000034_03915853_03921269 | ASB16 | coding | upstream | 463949 | 3915751 ~ 3921269 (-) |
| G172149 | NA | non-coding | downstream | 2370 | 3388487 ~ 3388774 (-) |
| G172148 | NA | non-coding | downstream | 2906 | 3388002 ~ 3388238 (-) |
| G172147 | NA | non-coding | downstream | 3275 | 3387632 ~ 3387869 (-) |
| G172021 | NA | non-coding | downstream | 60650 | 3328810 ~ 3330494 (-) |
| G172030 | NA | non-coding | downstream | 65933 | 3324484 ~ 3325211 (-) |
| G172170 | NA | non-coding | upstream | 34912 | 3486714 ~ 3486924 (-) |
| G172222 | NA | non-coding | upstream | 119411 | 3571213 ~ 3571431 (-) |
| G172225 | NA | non-coding | upstream | 122113 | 3573915 ~ 3574185 (-) |
| G172226 | NA | non-coding | upstream | 122555 | 3574357 ~ 3574705 (-) |
| G172227 | NA | non-coding | upstream | 123409 | 3575211 ~ 3575418 (-) |
| G172016 | NA | other | downstream | 154529 | 3234963 ~ 3236615 (-) |
| CI01000034_02510595_02511512 | NA | other | downstream | 879623 | 2510061 ~ 2511521 (-) |
| G171835 | NA | other | downstream | 944851 | 2441821 ~ 2446293 (-) |
| G171755 | NA | other | downstream | 1524771 | 1864118 ~ 1866373 (-) |
| CI01000034_01312431_01312780 | PRR15LA | other | downstream | 2072890 | 1311529 ~ 1312780 (-) |
| CI01000034_04165535_04172272 | KCTD13 | other | upstream | 714697 | 4165373 ~ 4172272 (-) |
| CI01000034_04216451_04218876 | NA | other | upstream | 764410 | 4216212 ~ 4221881 (-) |
| G172593 | NA | other | upstream | 1541158 | 4992960 ~ 4994943 (-) |
| G172800 | NA | other | upstream | 2337230 | 5789032 ~ 5789738 (-) |
| CI01000034_05795972_05811363 | NA | other | upstream | 2345768 | 5795835 ~ 5811781 (-) |
