Gene
RNA
| Item | Value |
|---|---|
| gene id | G170305 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 3576427 ~ 3576638 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU193485 | True | 212 | lncRNA | 0.38 | 1 | 3576427 | 3576638 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_03556390_03566045 | NA | coding | upstream | 9902 | 3554625 ~ 3566525 (+) |
| CI01000034_03533995_03552021 | SPOP | coding | upstream | 24322 | 3533995 ~ 3552105 (+) |
| CI01000034_03432846_03437608 | NDUFA4, NDUFA4L | coding | upstream | 138594 | 3432846 ~ 3438839 (+) |
| CI01000034_03422028_03431218 | SLC35B1, S35B1 | coding | upstream | 144831 | 3421289 ~ 3431596 (+) |
| CI01000034_03407574_03419313 | FAM117A, FAM117AA | coding | upstream | 157036 | 3405952 ~ 3419391 (+) |
| CI01000034_03656686_03659087 | NA | coding | downstream | 80048 | 3656686 ~ 3659172 (+) |
| CI01000034_03670122_03684523 | NA | coding | downstream | 93305 | 3669943 ~ 3685216 (+) |
| CI01000034_03855726_03858565 | NA | coding | downstream | 278913 | 3855551 ~ 3859311 (+) |
| CI01000034_03869116_03883535 | SLC4A1A | coding | downstream | 292478 | 3869116 ~ 3883690 (+) |
| CI01000034_03887718_03890074 | NA | coding | downstream | 310527 | 3887165 ~ 3890409 (+) |
| CI01000034_03273191_03285382 | NA | non-coding | upstream | 279204 | 3272420 ~ 3294805 (+) |
| G170280 | NA | non-coding | upstream | 293255 | 3281406 ~ 3283172 (+) |
| G170276 | NA | non-coding | upstream | 316391 | 3259782 ~ 3260036 (+) |
| G170274 | NA | non-coding | upstream | 318358 | 3257790 ~ 3258069 (+) |
| G170328 | NA | non-coding | downstream | 21040 | 3597678 ~ 3597877 (+) |
| G170330 | NA | non-coding | downstream | 22064 | 3598702 ~ 3598939 (+) |
| G170332 | NA | non-coding | downstream | 23366 | 3600004 ~ 3600216 (+) |
| G170336 | NA | non-coding | downstream | 26376 | 3603014 ~ 3603228 (+) |
| G170339 | NA | non-coding | downstream | 30063 | 3606701 ~ 3606923 (+) |
| G169806 | NA | other | upstream | 1238737 | 2317973 ~ 2337690 (+) |
| CI01000034_01729413_01730790 | EVE1 | other | upstream | 1845250 | 1729413 ~ 1731179 (+) |
| G169340 | NA | other | upstream | 2265549 | 1250219 ~ 1310878 (+) |
| G169394 | NA | other | upstream | 2382867 | 1150297 ~ 1193560 (+) |
| CI01000034_04125435_04125780 | RPRML | other | downstream | 548462 | 4125100 ~ 4126825 (+) |
| CI01000034_04192675_04200041 | NA | other | downstream | 618000 | 4192311 ~ 4200636 (+) |
