G172316


Basic Information

Item Value
gene id G172316
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3934545 ~ 3937466 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195767
TAACTAGTAGTGTGTTTTCAAGATTAATGAGTTGTAAAGTGTACAAGTTATTTTAGGTGTGAGTTTTTTTCTTGCTGTTGAACATATTTGTTATGCACCCAACATTGAATTGTTAAGAATATCAGCAAACAACCATGTTAATTAATACTATTCATTTATATAACAGAGTGAACATTAAATGTATCCAGAAATGAATTGTCGTCACTCAAAGGAAATTTGACACCTCCAGTAAAATTCATTCGACGCCTGAATCTAGTAGAAGCAACATTCCTCTAGAAAACACGGCATCTGCAACACTGTGGTCAAACTCAAGGTTCAAAGCGCTCTGATGTTATCTGCAGTGGTTCTTCTAGTGCCAGTTCCTGTCATGACCATGATTCCCAGTCTTTTCCTTCTGTGTCCAGCACCATGACTGTGCCCATGTGAATTACCTCTGTGTCCACTACTTTTATGTCTGTGTGTTTCATGCCCTCTTTTAGCACGTGAGCCCCGGGTGTGTCCAGTCCGATGCCCATGTCTATGTTCAGTGCCATGAACCCTCTTATTAGATGGTCTCCTACCATGTCCAGTTGTTTTATCTTTACTCCTGAGCTCACGTGTCACCAGTGTCGTCCTGCTCTCCAGCGTTTTTGTCTTCTCAGGTGCCGCTGAAAACTCTTTATGTCCTTGATGGACTTCATCAAGACACAGGGGACAAATGAACCGTTGTTCTCCCAGTGGTCTGTTGTGCTGTGAGCAAATATTTCCTTTAGGCTCCTGATTTATAACAATCACTGTGTGTTTTTCTGTGGGATAGTCATTGTTATGATATCTCAGGTGCATCTTACAGCATGAATCCTCACTTTCTGGATATATCTTTAAAGTTTTGGGGTTTTTTGCAGTGCAGGTTTCTCTCTCCGTGTGTCCAGGTCCGTCATAATGTGTGCGTGGAGAATCCTGAAGGCCTGTGTTTTTAAACCGCTCCACCACTTCTGCAAACATAGTGTTTTTGTTAAGAACAGGCCGAGGTGAGAAGGTCTTCCTGCACTGAGGGCAACTGTAACCAACGTCTTTGCCGCTATTTTTATCCCAGTAGTCTTGAATGCAGCCCATGCAGTAGTTGTGTCCACAGGGAATCGTCACTGGATCCTGGAGTGCATCTAGACAGATAGGACAGTTGAATGGATCGAGGTCTTCGAAACACTCCTCTGCCATTTCACACGCTTGTCTGAACTTATAATTGACTGTTTTAAATTCAGTGTTCGCTCGCTCTACATGTCAAGATTTGTTCCGTACTTAGTGTGTGAGAGCAAAAGAGAGAAAAGGAAACTGGTGTGTTTAAGTACAGTAACCTGTTTGACAGGTACAAGCATCTGTCAACAAAGTATTTTTTCATTGCTTTTCCTTGAGAAAATACACTACCAGCCAAAAGTTTAGACACGCCTACTATTTTCTCCAAATTTTAGAATAATAGTAGAGATTTAAACTATAAAAATAATCCAAATGTATATGAAGAAAGTATAATTCATTAACAATTTTTTTTTATCTTATATAAAGTTCAACCAACTTCATGAAGAACATATTGAGATTTTTCTAAATAAATAATTAAGAAAAATAGCTATAAATAATTTACAAATAAAGAAATCCAAAGAAAACTACAAACATGTTAAGCATAAGTCTGAAGCTCATCAAGGCTGCATTTACTGGTATTTGATCTAAAATTTAGTAATATTGTGGAAATAACTTGTATTGATGCTTAATAAAAGTATTAATTTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTAAATCTCACTGATCCCAAACTTTTGAATGGTAGTGTATATTGAGTTTTGTGTCCAAAATGTTGCCAAATAGTGTATTCTTGGATGATCCAAACTTGAGGTTTGTGATAATTTAGAAATAAACTTGCTTAAACCTTGTGCAAATAACAAACTGAAACAAATAAATTGTCTTTATTCACACATAATAACCAAAAAAATTATATATTTTATCTTTATTTTGTATGGCCTCCTTTGGCCTTGATAACAGCTTGCATTCTTGCCAGTATTGTTTTTATACTTTGTACTTTTCCAAAGTCTCTGTTGTTATTGAATTCCAAACAGTTGTTCCCAAAGACTTGATTAAACTTTTGTGTGATCTATCTTTGAATCCATTAAATCCAAACAATAATTATATTTTAGCATTAGAAACACTACAGTGACTAAAGAGCTTACACATACTGGTGTGGATTAATCATTACAGAGACATAAAAAATGATAACATGATTTTGGTAATCACCAATACTGTTAGTTTAGGGCAGCTGTGGCACAAACCTTACATTAGGTGGTGGTCTTATACATTTTTCTGATTAGATGCCAGCAAAGCTCCACTGGTACACACAGCGCTGGGATTTGTCTCTCTCAAACATTACACACTGTAAGAAAAAATTATGAGGACGTTAAAGATCTTGATGAAGAAGTGTATTGCAGCAAAGCAGTGACACAGTACATGAAGCACCTTGGGTTCATCGGCGTCGGAATGAACCCAGAACATCCAAATCTCAAACCTTTTATCCAGTTACAGTTTACCACCCTTTATGTAAATGTAGCTGCTCATGTTTTAACAGCTGTGGTCTATATGTTAATGAAGTTGTGATACACCCCATTGTCTGAGATGGTTACCACTGTCCCACACCTATTCCCATTCTACAGTTGATGACCATTTGGTCAGGATGTGATCAACCCTAATGGTGCAGAAACAACATAACTGTTGACTTTCTTCTCTGTGATAATTAAGCCATTTTGTGGATGAGCTCATTCTAAAATATACTTTGGAGTGGAATCTGGGTCGAGGCAGACTACATTTTCTTACAACACTCAAATGTGTACACACACTTTATTTTATTACACGCATGCAAACCACACTCTAACATCCATACCAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195767 True 2922 lncRNA 0.37 1 3934545 3937466

Neighbor

gene id symbol gene type direction distance location
CI01000034_03915853_03921269 ASB16 coding downstream 13276 3915751 ~ 3921269 (-)
CI01000034_03911480_03913846 TMUB2 coding downstream 20699 3911075 ~ 3913846 (-)
CI01000034_03803160_03827982 NGFRA coding downstream 106563 3802832 ~ 3827982 (-)
CI01000034_03659420_03661699 NXPH3 coding downstream 272846 3659290 ~ 3661699 (-)
CI01000034_03577874_03611044 NA coding downstream 323446 3577454 ~ 3611099 (-)
CI01000034_03956763_03960891 NA coding upstream 19297 3956763 ~ 3960891 (-)
CI01000034_04019323_04045212 MRC2 coding upstream 81774 4019240 ~ 4045212 (-)
CI01000034_04065210_04081772 TLK2 coding upstream 127053 4064519 ~ 4081772 (-)
CI01000034_04087755_04088054 NA coding upstream 150097 4087563 ~ 4088764 (-)
CI01000034_04090497_04095923 NA coding upstream 152766 4090232 ~ 4095923 (-)
G172303 NA non-coding downstream 1928 3931628 ~ 3932617 (-)
G172312 NA non-coding downstream 3260 3928905 ~ 3931285 (-)
G172314 NA non-coding downstream 60163 3870728 ~ 3874382 (-)
G172346 NA non-coding downstream 83643 3850581 ~ 3850902 (-)
G172240 NA non-coding downstream 336667 3597592 ~ 3597878 (-)
G172298 NA non-coding upstream 75034 4012500 ~ 4016694 (-)
G172366 NA non-coding upstream 109209 4046675 ~ 4047140 (-)
G172297 NA non-coding upstream 126426 4063892 ~ 4064161 (-)
G172378 NA non-coding upstream 179017 4116483 ~ 4116934 (-)
G172379 NA non-coding upstream 179513 4116979 ~ 4117214 (-)
G172151 NA other downstream 536732 3391144 ~ 3451802 (-)
G172016 NA other downstream 697930 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1423024 2510061 ~ 2511521 (-)
G171835 NA other downstream 1488252 2441821 ~ 2446293 (-)
G171755 NA other downstream 2068172 1864118 ~ 1866373 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 229033 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 278746 4216212 ~ 4221881 (-)
G172593 NA other upstream 1055494 4992960 ~ 4994943 (-)
G172800 NA other upstream 1851566 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1860104 5795835 ~ 5811781 (-)

Expression


Co-expression Network