G172297


Basic Information

Item Value
gene id G172297
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4063892 ~ 4064161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195748
NNNNNNNNNNNATGTTTCTCATTGTGTCTTTGGACAGAATCTAATGTTGGAAAATGAGATAAAGTTAGATTTTATTTTTCATTGATTAAAAGTGTTGTGCCTCACATAGAAACACACAGACACAAATGCGTTCAAAAATTACACACAGTCATATATGTTTAGGTCTGGTGATGCGGCTAATTGCCTGATCCTGTTTTACTGTTTGTGGGAAAGAACTCTCTAGCGGGGGCGGAGCTAGTTCAGGGGTACAGGGCAGAACTTGGAGCGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195748 True 270 lncRNA 0.39 1 4063892 4064161

Neighbor

gene id symbol gene type direction distance location
CI01000034_04019323_04045212 MRC2 coding downstream 18680 4019240 ~ 4045212 (-)
CI01000034_03956763_03960891 NA coding downstream 103001 3956763 ~ 3960891 (-)
CI01000034_03915853_03921269 ASB16 coding downstream 142623 3915751 ~ 3921269 (-)
CI01000034_03911480_03913846 TMUB2 coding downstream 150046 3911075 ~ 3913846 (-)
CI01000034_03803160_03827982 NGFRA coding downstream 235910 3802832 ~ 3827982 (-)
CI01000034_04065210_04081772 TLK2 coding upstream 358 4064519 ~ 4081772 (-)
CI01000034_04087755_04088054 NA coding upstream 23402 4087563 ~ 4088764 (-)
CI01000034_04090497_04095923 NA coding upstream 26071 4090232 ~ 4095923 (-)
CI01000034_04101415_04114654 ITGB3A coding upstream 36461 4100622 ~ 4114654 (-)
CI01000034_04154954_04164874 NA coding upstream 90490 4154651 ~ 4164874 (-)
G172366 NA non-coding downstream 16752 4046675 ~ 4047140 (-)
G172298 NA non-coding downstream 47198 4012500 ~ 4016694 (-)
G172316 NA non-coding downstream 126426 3934545 ~ 3937466 (-)
G172303 NA non-coding downstream 131275 3931628 ~ 3932617 (-)
G172312 NA non-coding downstream 132607 3928905 ~ 3931285 (-)
G172378 NA non-coding upstream 52322 4116483 ~ 4116934 (-)
G172379 NA non-coding upstream 52818 4116979 ~ 4117214 (-)
G172384 NA non-coding upstream 60958 4125119 ~ 4126846 (-)
G172398 NA non-coding upstream 137652 4201813 ~ 4202052 (-)
G172402 NA non-coding upstream 148293 4212454 ~ 4212802 (-)
G172151 NA other downstream 666079 3391144 ~ 3451802 (-)
G172016 NA other downstream 827277 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1552371 2510061 ~ 2511521 (-)
G171835 NA other downstream 1617599 2441821 ~ 2446293 (-)
G171755 NA other downstream 2197519 1864118 ~ 1866373 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 102338 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 152051 4216212 ~ 4221881 (-)
G172593 NA other upstream 928799 4992960 ~ 4994943 (-)
G172800 NA other upstream 1724871 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1733409 5795835 ~ 5811781 (-)

Expression


Co-expression Network