G172384


Basic Information

Item Value
gene id G172384
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4125119 ~ 4126846 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195835
CAATGTTTTAAACAACTTTATTCAAAGCATGCTGCACAACTTCAAGTTTTCAAGTCAGTATAGTTTACAAAATATTCCATGCAGCATTGAGGTGTTACCTAGAAAGTGCCTGACACACCGCATGCAGAGGGAGAGACGTCAACCGCTGGGATCAGGGAAGAAATCACTTGAAAACGCCCCCACCAGACGAGCATCTCCCCCCTCACGTGCTCTCGGCCACAAGTTAAACTCCAAGAAAAATACATTTTGACATCTTCAAAATCAAAACACCTGCGATTCAAGGTGCAAAAGTCACCGTTCACAAAACAACATGCTTTCGGAAGTGATTGTCTAGTACAAACCAGGGTGGTGAGTTTGGGGAAGTCAGAATTTCTCCATTTATAAGGCTTGAACCCCCACCCCCACCCCCAAAAGAAAGTCAAACACAAGATTTGGAGGCTCTTAGTAGATGTAAAAAAAAATTTCATGCAAGCGTATATTGGTTTCAAACAGGGTTTTCAGTAATAATAAAAGTTAGACCGCTTATTTTCACATGTCGTTAAATTGTGCTGTCAAGGAAGTAACCATGACAACACGATTGACGATTTTTGTGCGGGTGTGACAATAAAGCATAAGTTATCGTGTATCACTGTGTTATGACAAAAATATTCGTATTTGTTTAAACTATATTGTAGATAACGGACTTTTAGAATAGTTGCGCCCAAAATAGCTACAATTTTCGTTTCGCAAGTCGATCCCCCTCACGCTAAAGTCACTGTATAATTCGCATAGCTACTTTTACAAACATAATGCAGGAACACATACTCTGCTTTTTATGAGGTAAAAACGTGTAAACACTTCAATGTAAAAAATCACAAGCAAAATTACCTCAAATACAAAAAGCTACGTAAACATGAATAAATACATTCTCATTTTGTAAACGTGCAGCTGTATCTCTGTCATTTTTGCTTCAAGAACAGTTCATCCACATCGCCTTTTCTTCCCAGAACACAAAGATGTAAGTTGCATATCTTCCTGCCTCCCAATCTGAGGACAATTGCAGCCCGGTTACAGGTGACACCCGTGGCTAACTCAGTCCGATCATCACCGCCTCGACGTCTTTGGATGGTCTCCGGTCCTTGACCAGAAAGTTAATCATACTTTCGGACTTAATCATGAGGTTGCAACCGAGAAAGAAGATGCCGAACATCACTGTGAGTGAAAGAACGCACAACACCGCGATCTGCACCACGCGCGTAACGAACAGCTTGCGCTCGTCATGAGCGAGAACTAAAGACCCGCCACCGTCGTTTGCGGTCACCTCGCTCCCGTTACCCGTGCAGCAATCAACTAGTGTCCCTGCGAGCTCTTGACTGCGGTTGAGCAGAACGCCGTGCGTAAACACCGTGTGGTTGAAAAACGTTCCGTTCATCCTGAGGGGAGACGCAGAACACTGAAGCTGAAGACAGTCGAGACTCTTATGGCATCAAGTCACTTTCTGCAACTGCCTGTTGAGTCGGGCAAGTTTCATGAGGAGAAAAAAGTAATAAAAGTATCTCCTAAAATCATTTGGGATTGTTCATGCCACCAGTTTACACGCAAATTGGATAAAAAAGTGCCCCGTTTCTGTTGCGTTCTCGCACACTTGGCTGTCAATAAGTACTTTTACAACCACGATCAACGCCCAATCCATTTGCAAAGCCACTGCAACTCAGTTGAGACCTGCGCGCAGGTTTCGTGTGTGCGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195835 True 1728 lncRNA 0.44 1 4125119 4126846

Neighbor

gene id symbol gene type direction distance location
CI01000034_04101415_04114654 ITGB3A coding downstream 10465 4100622 ~ 4114654 (-)
CI01000034_04090497_04095923 NA coding downstream 29196 4090232 ~ 4095923 (-)
CI01000034_04087755_04088054 NA coding downstream 36355 4087563 ~ 4088764 (-)
CI01000034_04065210_04081772 TLK2 coding downstream 43347 4064519 ~ 4081772 (-)
CI01000034_04019323_04045212 MRC2 coding downstream 79907 4019240 ~ 4045212 (-)
CI01000034_04154954_04164874 NA coding upstream 27805 4154651 ~ 4164874 (-)
CI01000034_04165535_04172272 KCTD13 coding upstream 38527 4165373 ~ 4172272 (-)
CI01000034_04174469_04189564 SEZ6L2 coding upstream 47570 4174416 ~ 4189564 (-)
CI01000034_04216451_04218876 NA coding upstream 89388 4216212 ~ 4221881 (-)
CI01000034_04239062_04242494 NA coding upstream 111925 4238771 ~ 4242640 (-)
G172379 NA non-coding downstream 7905 4116979 ~ 4117214 (-)
G172378 NA non-coding downstream 8185 4116483 ~ 4116934 (-)
G172297 NA non-coding downstream 60958 4063892 ~ 4064161 (-)
G172366 NA non-coding downstream 77979 4046675 ~ 4047140 (-)
G172298 NA non-coding downstream 108425 4012500 ~ 4016694 (-)
G172398 NA non-coding upstream 74967 4201813 ~ 4202052 (-)
G172402 NA non-coding upstream 85608 4212454 ~ 4212802 (-)
G172411 NA non-coding upstream 131709 4258555 ~ 4258786 (-)
G172412 NA non-coding upstream 132420 4259266 ~ 4259613 (-)
G172413 NA non-coding upstream 134124 4260970 ~ 4261263 (-)
G172151 NA other downstream 727306 3391144 ~ 3451802 (-)
G172016 NA other downstream 888504 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1613598 2510061 ~ 2511521 (-)
G171835 NA other downstream 1678826 2441821 ~ 2446293 (-)
G171755 NA other downstream 2258746 1864118 ~ 1866373 (-)
G172593 NA other upstream 866114 4992960 ~ 4994943 (-)
G172800 NA other upstream 1662186 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1670724 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025249 rprml coding NC_007114.7 CM002887.2 19609638 ~ 19610990 (+)