G172402



Basic Information


Item Value
gene id G172402
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4212454 ~ 4212802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU195853
CTTTCACTGGAACTAAGGGGCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCCCCCTCCACCAAACTTTACACTTGGCACAATGCAGTCAGGCAAGTACCGTTCTCCTGGCAACCGCCAAACCCAGACTCGTCCATCGGATTGCCAGACAGAGAAGCGTGATTCATCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGGCGTGCTTTACACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGTTGCTCGGCCATGGTAACCCATTCCATGAAGCTCTCTACACACTGTTCTTGAGCTAATCTGAAGGCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU195853 True 349 lncRNA 0.53 1 4212454 4212802

Neighbor


gene id symbol gene type direction distance location
CI01000034_04174469_04189564 SEZ6L2 coding downstream 22890 4174416 ~ 4189564 (-)
CI01000034_04165535_04172272 KCTD13 coding downstream 40182 4165373 ~ 4172272 (-)
CI01000034_04154954_04164874 NA coding downstream 47580 4154651 ~ 4164874 (-)
CI01000034_04101415_04114654 ITGB3A coding downstream 97800 4100622 ~ 4114654 (-)
CI01000034_04090497_04095923 NA coding downstream 116531 4090232 ~ 4095923 (-)
CI01000034_04216451_04218876 NA coding upstream 3432 4216212 ~ 4221881 (-)
CI01000034_04239062_04242494 NA coding upstream 25969 4238771 ~ 4242640 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding upstream 105742 4318544 ~ 4320127 (-)
CI01000034_04350907_04363668 NA coding upstream 137804 4350606 ~ 4363683 (-)
CI01000034_04370706_04374491 SPC24 coding upstream 157824 4370626 ~ 4375413 (-)
G172398 NA non-coding downstream 10402 4201813 ~ 4202052 (-)
G172384 NA non-coding downstream 85608 4125119 ~ 4126846 (-)
G172379 NA non-coding downstream 95240 4116979 ~ 4117214 (-)
G172378 NA non-coding downstream 95520 4116483 ~ 4116934 (-)
G172297 NA non-coding downstream 148293 4063892 ~ 4064161 (-)
G172411 NA non-coding upstream 45753 4258555 ~ 4258786 (-)
G172412 NA non-coding upstream 46464 4259266 ~ 4259613 (-)
G172413 NA non-coding upstream 48168 4260970 ~ 4261263 (-)
G172414 NA non-coding upstream 50524 4263326 ~ 4263835 (-)
G172415 NA non-coding upstream 52281 4265083 ~ 4271495 (-)
G172151 NA other downstream 814641 3391144 ~ 3451802 (-)
G172016 NA other downstream 975839 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1700933 2510061 ~ 2511521 (-)
G171835 NA other downstream 1766161 2441821 ~ 2446293 (-)
G172593 NA other upstream 780158 4992960 ~ 4994943 (-)
G172800 NA other upstream 1576230 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1584768 5795835 ~ 5811781 (-)

Expression



Co-expression Network