G172414


Basic Information

Item Value
gene id G172414
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4263326 ~ 4263835 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195866
CAAACTGCACAACTCGCTGTGAACTCGCTCAGGGCGGTTCTATGTTAAAACGGCAGTGTCTGTCAACATTCGTGGGTGGGGCCTGTGGCTAATGTGACGTCACATTGCCAAGGATCTGGAAACGGCTTGTTCTGAGACACTCCTTATGATTTATGGGGATTAAAAAAAAAAGGGGCGGTTGGATTTTTATCATTATAGGGTGATTGTGTACACACTGCCAACACACATTTATGTACAAAAACCCTGCAAAAGTTTTTTTTAATCACCTATTGTTCTGCACCTATTTTTTATCACCTTCTTCTTCCTCTCTGGAAGTCTATGGCAGCCCATAGAAACGCTTGCAGGAATGTTATGAAATTTGGCACACTGATAAAGGCCAGTCTGAACTGTCACCATAGGAAATTTGGAGCCACCAACTGTCCAAATTTGCACTTATATTTATGCTAATAACTTTTGAACCGTAAGGGCTAGAAACAAAATTCTATTCTCCCCCAATTCCTTGGCTTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195866 True 510 lncRNA 0.42 1 4263326 4263835

Neighbor

gene id symbol gene type direction distance location
CI01000034_04239062_04242494 NA coding downstream 20686 4238771 ~ 4242640 (-)
CI01000034_04216451_04218876 NA coding downstream 41445 4216212 ~ 4221881 (-)
CI01000034_04174469_04189564 SEZ6L2 coding downstream 73762 4174416 ~ 4189564 (-)
CI01000034_04165535_04172272 KCTD13 coding downstream 91054 4165373 ~ 4172272 (-)
CI01000034_04154954_04164874 NA coding downstream 98452 4154651 ~ 4164874 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding upstream 54709 4318544 ~ 4320127 (-)
CI01000034_04350907_04363668 NA coding upstream 86771 4350606 ~ 4363683 (-)
CI01000034_04370706_04374491 SPC24 coding upstream 106791 4370626 ~ 4375413 (-)
CI01000034_04376314_04386958 NA coding upstream 112479 4376314 ~ 4386958 (-)
CI01000034_04392399_04400096 LDLR, LDLRA coding upstream 128365 4392200 ~ 4400096 (-)
G172413 NA non-coding downstream 2063 4260970 ~ 4261263 (-)
G172412 NA non-coding downstream 3713 4259266 ~ 4259613 (-)
G172411 NA non-coding downstream 4540 4258555 ~ 4258786 (-)
G172402 NA non-coding downstream 50524 4212454 ~ 4212802 (-)
G172398 NA non-coding downstream 61274 4201813 ~ 4202052 (-)
G172415 NA non-coding upstream 1248 4265083 ~ 4271495 (-)
G172419 NA non-coding upstream 14018 4277853 ~ 4278155 (-)
G172420 NA non-coding upstream 26012 4289847 ~ 4290095 (-)
G172421 NA non-coding upstream 26818 4290653 ~ 4290854 (-)
G172422 NA non-coding upstream 27696 4291531 ~ 4291746 (-)
G172151 NA other downstream 865513 3391144 ~ 3451802 (-)
G172016 NA other downstream 1026711 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1751805 2510061 ~ 2511521 (-)
G172593 NA other upstream 729125 4992960 ~ 4994943 (-)
G172800 NA other upstream 1525197 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1533735 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G305030 NA non-coding NC_047614.1 CM018560.1 9606546 ~ 9612552 (+)