G172415


Basic Information

Item Value
gene id G172415
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4265083 ~ 4271495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195867
GCCGAGAACAGCAGCACTCACCTAATCCAGGCTGCTCTGCGTTGATATTGACCCTGTACTCTTTACAGAACACCTGATAGGCTGTCGTGTTCTTCTTCTTTGGCTTGTCCTTGTCATGTTTCTCTCTCTCCTTTTCCTCCTTCTTCTTCTTCTTCTCACCCATCAGTTCAATGCTTTGATGATGATGGGATGAGGTGGGTGGAGCCATAGCGTACATGCCACCAGAAGAGCTGTGATTGGTTGAGCTGTGAGAATGGGAGTGGCTTCTGGACTGATCACCTGGACAGCTTTTCTTCCCTCCACTTCCTTTGCTGTGTTTCTTCTCCCTGGATCCTTTCTCTCTGTCTCGCTCTCTATCCTTTTTCTTTTTGCTCTTCTTGCTCTTTTTCTTCTTTTTAGAAAGATGTGTGTACGAGTCGTCAATCACCAGCTCGCCGGCCTCTAGCTCTCCTCCTGAAGAGGAGCTGTCTCCTCCCATCCCTCCGTAAGAGCCACCGTAATGACCTGATGAATACAAACACACATTTAACACCGCAATAAATTCATGTTAAGGCTTAGATGATGATCTCAAAATAGATTAAATTACAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195867 True 590 lncRNA 0.46 3 4265083 4271495

Neighbor

gene id symbol gene type direction distance location
CI01000034_04239062_04242494 NA coding downstream 22443 4238771 ~ 4242640 (-)
CI01000034_04216451_04218876 NA coding downstream 43202 4216212 ~ 4221881 (-)
CI01000034_04174469_04189564 SEZ6L2 coding downstream 75519 4174416 ~ 4189564 (-)
CI01000034_04165535_04172272 KCTD13 coding downstream 92811 4165373 ~ 4172272 (-)
CI01000034_04154954_04164874 NA coding downstream 100209 4154651 ~ 4164874 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding upstream 47049 4318544 ~ 4320127 (-)
CI01000034_04350907_04363668 NA coding upstream 79111 4350606 ~ 4363683 (-)
CI01000034_04370706_04374491 SPC24 coding upstream 99131 4370626 ~ 4375413 (-)
CI01000034_04376314_04386958 NA coding upstream 104819 4376314 ~ 4386958 (-)
CI01000034_04392399_04400096 LDLR, LDLRA coding upstream 120705 4392200 ~ 4400096 (-)
G172414 NA non-coding downstream 1248 4263326 ~ 4263835 (-)
G172413 NA non-coding downstream 3820 4260970 ~ 4261263 (-)
G172412 NA non-coding downstream 5470 4259266 ~ 4259613 (-)
G172411 NA non-coding downstream 6297 4258555 ~ 4258786 (-)
G172402 NA non-coding downstream 52281 4212454 ~ 4212802 (-)
G172419 NA non-coding upstream 6358 4277853 ~ 4278155 (-)
G172420 NA non-coding upstream 18352 4289847 ~ 4290095 (-)
G172421 NA non-coding upstream 19158 4290653 ~ 4290854 (-)
G172422 NA non-coding upstream 20036 4291531 ~ 4291746 (-)
G172475 NA non-coding upstream 62654 4334149 ~ 4334773 (-)
G172151 NA other downstream 867270 3391144 ~ 3451802 (-)
G172016 NA other downstream 1028468 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1753562 2510061 ~ 2511521 (-)
G172593 NA other upstream 721465 4992960 ~ 4994943 (-)
G172800 NA other upstream 1517537 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1526075 5795835 ~ 5811781 (-)

Expression


Co-expression Network