XLOC_009047


Basic Information

Item Value
gene id XLOC_009047
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11818484 ~ 11825881 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019124
ATTTCACGAAGGTCCAAGCATTTTAAAATTTCTGGCCTCGCCCCtgaaataaggtcaatattatctaCAATATTGCACAATAAAGTTCTATTGCTATCTGTGTTCACAGTATTTAAAACCTCTTTGTCTACCTCTGGTCTCCGCTGGACCTGTCCTGGCTGCTGTCTGGTGAGAAAGATCCTGGGATGCTGCAGGCCTCATCTGAGTCGTCTATCAGGGAAGATTTATCACTGTCAGAAAACTCACTGCTGTAATCCATCGGCACCTCGGCATCTGTGCTCGGACTTAATatgtctgagagagagagagataagaaAGAGTGTGTGACCGGATGAGGCTGGCTTCTTCAGACGTCATGCTGCTGTTGAGGCTACTAAGGGACTCGGTTGTGGACAGACGCAGAGACTGACTGCTGGTCAGGGACGTGGTGGACAGACGCCTTTTTCTCGCACCGCTGCAGTTATTGGGGATGCTGAAGGCACAGCGTTTGTGATAGTTCAGTCCACACCCTGCAGGGGGAGACAGTGAGAGGGGAAAATGGTCATTGTGTACAATTGtcacataaatatttaattagattaggttttaaatttatgtttatgCTCATGATATGTTTAGCAATATTTAAATGAACACgggaataatgaataaaaaatctaattttaaaagaCAGAGTTCCTACCATCGCATTTGAGACCTTGACGCACCAGGCCGAAAAGCATCTCGCCGCAGTGATCACAGAATGCAGGTGCACGATAGGAGTGCACATTTAACGCATGTGGACGAATCTGGAAATCTTCAAACGTGGCAGCAGCTGCAGAATATATCACATTTACATCGTTAAGATCAGCGCTAATGTTAAAATTGCTTTCACATGATCATTAGGGACAAAATCCAGTTCATGTACATGCAtgcattaacataatataaaactgCTTCTGTCAGTATTCATACTTTAGTCAGTACTGACCTTTACAGAAACTAAAAAATATCTTTGAAAAAGCTTTGTAAGCTTTAAGGTTAAACGTGAAGAGATAAAATGAAgagtaaaaaaaatcatgtttaatgTTTCACCTTGTAACATGAATGAaaacattattatgtttttaacaaGTTTAGTACATGGCTAAAATGTGTATGcacatgaataagcatgttatcAGTACATCTTTAGCATGATTCATTATGTTGCTAACATATTTTAACATGATGGTGTTTACTttgtttcagtaaaaaaaaaacttaaaattgtaaggaaaaaggttgcagggtttttttttatttttttttattttggttaaaagtTGAATCAACTCAGAAAAGCTGCCTTACCATTCTAAGGTAAGTcaagcttttattttcattttatgtatgtatgtatgtatgtatgtatatatgtatgtatgtatgtatgtgtgtatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtagagAGAGATTTAGAATCTACAGTAAGTGATCATTTCTTTTCACTGGCTGCAgactatagttgaagtcagaaatattagcccgcttgattatttttttccccaacttctgtccaacggagaaaatatttttttcaacacatttctaaacataatagttttgacaaCTCacatctaataactgatttattttatctttgccatgatgacggtaaataatcatttttactagatatttttcaagacacttctatacagcctaaagtgacatttaaaggcttaactatgttaattaggtttactaggcaggttagggtaattaggcaaactattgtataacaatggtttgttctgtagactattgaaaaaaaaaagttagcttaaaggggctaataattttgtcactaaaatggcttttaaaaattaaaaactgcttgtattgtagccgaaataaaacaaataagacatactgtaaaaataatttaatttttttaagttctttaagtttagaaatttgttgaaaaatcttctgtccgttaaacagaaattagggaaaaaataaacaggggggttaataattcggggggctaataattttgacttcaactgtaaataagtaatacagttgcaatcagaattattaaagaaaaaaatacattactaatgctttccttcttagactttacacacctgaaacttgcctacagcacttattcattgttgctcttagttgtgtaaattgctttcttgtcctcatttgtaagtcattttggataaaagcgtctgctaaatgactaaatgtaaatgtaaatacaaagcCTGTGGATCTATGTTGCGGTGCTTTTCAGAAATTAATTTTGCATTTGTTCCACCATAATGACATCCCAGTGTGTTTCTCCATATGGATAAATCTaactataaaaacac

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0048468 cell development biological_process
GO:0007498 mesoderm development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0035270 endocrine system development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0040011 locomotion biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019124 True 2396 lncRNA 0.34 2 11818484 11825881

Neighbor

gene id symbol gene type direction distance location
XLOC_009046 fkrp coding downstream 134955 11679759 ~ 11683529 (-)
XLOC_009045 NA coding downstream 395380 11414691 ~ 11423104 (-)
XLOC_009044 rab30 coding downstream 476849 11308462 ~ 11341635 (-)
XLOC_009043 prcp coding downstream 514793 11218246 ~ 11303691 (-)
XLOC_009042 BX293559.1 coding downstream 718764 11097869 ~ 11099720 (-)
XLOC_009048 NA coding upstream 44303 11870184 ~ 11875956 (-)
XLOC_009049 PRLHR coding upstream 127075 11952956 ~ 11956981 (-)
XLOC_009050 CR848025.1 coding upstream 150262 11976143 ~ 11976260 (-)
XLOC_009051 NA coding upstream 163182 11989063 ~ 11992903 (-)
XLOC_009052 si:dkey-202l22.6 coding upstream 178896 12004777 ~ 12011390 (-)
XLOC_009041 BX293559.2 non-coding downstream 832378 10973717 ~ 10986106 (-)
XLOC_009040 CT573316.3 non-coding downstream 1059383 10756210 ~ 10759101 (-)
XLOC_009039 AL807754.1 non-coding downstream 1632315 10186054 ~ 10186169 (-)
XLOC_009057 NA non-coding upstream 585103 12410984 ~ 12416138 (-)
XLOC_009059 NA non-coding upstream 690307 12516188 ~ 12545683 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G103130 prkd2,LOC107699186,LOC107728165,LOC107699228,LOC107566079 unknown NC_056713.1 CM032082.1 1844999 ~ 1845494 (-)