G172644



Basic Information


Item Value
gene id G172644
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5053126 ~ 5053360 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU196135
CGCCATATTGCAAACAGTGGTAAAGTCAGTGGCAGCAGGATTCATAATGCGCGCCGAAAATGGCTGCTTCCATTACTTCGATACCTCTTGGTGGAGATCTTGGAAGAAGGGGAGAGGCTTACGGGGATGGGCTGGGGGCGGCTAGTCAAAAATCGGTCATCCAGTTTCATCACTGTCCCATTCTAGCCCCATATAAGATGGGGGAAGTGCGTTTCTCCTGTCCACTTGGAGAAAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU196135 True 235 lncRNA 0.51 1 5053126 5053360

Neighbor


gene id symbol gene type direction distance location
CI01000034_05006303_05007855 NA coding downstream 45265 5006117 ~ 5007861 (-)
CI01000034_04997343_04999344 RPS2, RS2 coding downstream 53782 4997318 ~ 4999344 (-)
CI01000034_04988799_04990480 MSRB1A, MSRB1 coding downstream 62646 4988681 ~ 4990480 (-)
CI01000034_04978655_04981311 HAGH, HAGH.L, HAGHL coding downstream 71815 4978074 ~ 4981311 (-)
CI01000034_04951993_04959847 NA coding downstream 93279 4951530 ~ 4959847 (-)
CI01000034_05093584_05096564 NA coding upstream 39702 5093062 ~ 5096564 (-)
CI01000034_05147520_05150640 WFIKKN2, WFIKKN2A coding upstream 93646 5147006 ~ 5150640 (-)
CI01000034_05167889_05175190 ANKRD40 coding upstream 114529 5167889 ~ 5175312 (-)
CI01000034_05176199_05177220 NA coding upstream 122606 5175614 ~ 5177220 (-)
CI01000034_05189944_05197158 NA coding upstream 136524 5189884 ~ 5197531 (-)
G172643 NA non-coding downstream 400 5052400 ~ 5052726 (-)
G172609 NA non-coding downstream 66987 4984878 ~ 4986139 (-)
G172633 NA non-coding downstream 105034 4947881 ~ 4948092 (-)
G172627 NA non-coding downstream 207698 4843454 ~ 4845428 (-)
G172645 NA non-coding upstream 347 5053707 ~ 5054597 (-)
G172706 NA non-coding upstream 46921 5100281 ~ 5100485 (-)
G172714 NA non-coding upstream 98669 5152029 ~ 5152695 (-)
G172716 NA non-coding upstream 102126 5155486 ~ 5155685 (-)
G172719 NA non-coding upstream 107489 5160849 ~ 5161127 (-)
G172593 NA other downstream 58183 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 835384 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 880956 4165373 ~ 4172272 (-)
G172151 NA other downstream 1655313 3391144 ~ 3451802 (-)
G172016 NA other downstream 1816511 3234963 ~ 3236615 (-)
G172800 NA other upstream 735672 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 744210 5795835 ~ 5811781 (-)

Expression



Co-expression Network