XLOC_009057


Basic Information

Item Value
gene id XLOC_009057
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 12410984 ~ 12416138 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019127
CTCCAGGCAAGTTAGCGACACAGAAAGTTAGCACTGTTTCAGAAAAAAAGACTTCTCTGAGAGTAAAAGAACAATCATCTGGATTTAAGTTTACAAACTCTTCTGAACACATCATACGAAAGGAAAAGGCATCATGGCTCCACAACAAAATCCATTGGGATAGCCGTTGCATTTGGGATTTTAGGATTGTTCGTGCTAATCTGTGTAGTGCAAATCTGCTGCAAGAAAAAGTGCTGCAAGCGTAAAAAGCCTTCAGTGAAGGATAAAATTTTACAAAAAGTCGGGATAAAGAAATCCACGCCTCCATTTTCAGTTAGCAGGATCGTCGACAAGAAATAACCGTCATCACCGCACCTATTATTCTCTCGATACCTGTAAATAGTGTATATACAGCCTAGATTCACAACACTTATTTACACATTATGATGTGAAAGTATGCGTTGGtgtatttattttcttcagtTCTTTGAAAAGTCTGAATCACGTTTTTGAGGTGAAGATGTTATTAGCAATGGGGATGTTGATGATTCATCGCTGGTTAAGATAACTTTCCCACAGATATGAAAAAGCACAGCACACTTTTATTGCTATCGAGATCGATTATCTTGTCTTTTACTCTCAATGCCTGACTCTGTTTCTGTCTATCTTGTTTTTCAATCTCATCACAAAAATACACAGGACAATTCTTCCTCTCAAGCTAAATCGTTACCACATAAATGTGAGTTTAAAGGCCAACACTTAGACTGAAGAAAAAAACTGTTGCTTCAGTTCCAGTACATGGATCATTTCTTAATCGTGGAGGAAGCAATGTCAGATGATTTAATTCCTGTTAAGTAATATTATGTGTGAGATGTAATGTTGATAAGGACTCATCAAGTATGTGGTTTATAAATAGATGTACTATAATATTTAGAAATTTCTCTGTgatgagaataaataaataaaatgtttctgagattaaaaaaaaacatgaatttcatactttttaaaagacTATACATGTCGTTTATGCTTATATTTAAcaccatgaaaaaaataaaagtggaCACTTAAATTCATACAagacatttagattttttatatgtaaaggtTTGAAAACAGTAAGTATGCTGTTATAAACATATCTGTTGCACTGAAT
>TCONS_00019128
TCACAGTCTACATATGTACTCCAGGCAAGTTAGCGACACAGAAAGTTAGCACTGTTTCAGAAAAAAAGACTTCTCTGAGAGTAAAAGAACAATCATCTGGATTTAAGTTTACAAACTCTTCTGAACACATCATACGAAAGGAAAAGGCATCATGGGTAAGGAGCTTAATTTGGCACAGTGTGGCTATGTTctcaaaatatacttttgatTGGTTTAAAGCACTTCAAAGAGCTATGTAGTCATTGCAAATGTCTTTTGAAGTTGGTCATGAAAAATAGATGCTGAATGACtggatttaaatgtattttaactgaTAACAATTTATGTCTGTGTCGGTGACGTGTCAGTGCATATTTTGCGTTGAACACTGCAACATGTTATGCTAAGCTAATATAGTTGCAGTAAACATTCAGGACTAGCATCACTGttgaataataatgtgttttaGTCAGAAGATAAGTTTGTGTATATCGAAATCAGAATTTTTGCCTTTAACTGttgaaaaaactattaaaaagccaACAAAGTAGAAGCTGGCAGTAATGAATAGCAGTATTTGAACATAGCTCTAATACGTCTTAATGACACATTCAAACCTCATGGTAAACagtgttatttttaatcatttaaaatgattcagaagcaTAGAAAAAATTAAGGCCTCAAAAGGCCTGcaaattaatccattttggaaatatctacaaaacaaagacatttaaaaaccAAAACTTTGGCCTAACATTCAAACGGAATGCATGGAAGTTGGCAGACCTGTCTAACCTACTAAATTACTCTAAAAATTCTGGGTTATTAAAACCAAATTATGGGTATAATACGGACTAAACCAACTGCTGAGTTAAGTGTTTTGAAACTTAATTAATATGACCAAATTTATCCCAATGCTTGGgttagtttatattttatacaatttgggtttaaataacccagcatttcttagagtGAAGGATGTTAATTTGCATAAATAATATACTCAAAATAATGCTGAGGAGGCACACAAAGTCACAAAGagtctttcttttttatataaattaataaataaaaataaacaaatatttaagtcCAGCTGTGTTGAATGCCCCCTTGTTAATTTTGCACTCTAGGTAACAGCCTGCGTTCTTGTCACATAGGCCCCTGGATTGCATTTTCTATTCGGAGGTCATAAATTAAACTAGCCATGCTAAACAGACCCTTGTGAAATATTGTCAGTTTCACTGTCTAATGTGGTGTTTtccaattaattaattgtatgccacatttaaagtcgtAATGCATGATTTTATTCTTTGGTAACTGATTGAATTGTTGAAAATGGGTGTTGCTAAAAAAATGAAGTAAGACTAAAGAATAAACAAATTCAGAGCAAAGCATCCATGACCATAGACGTAGTAGAGAGGTCTCTGTCAGTCAGTATTTGGACAAGAGCACTCTTTTGCATGGTGTTACTATTGATAGGAgaaattaagcattttaaaagcTTCAGAACAATGGCGTATATGCACAGACAATTAATTTCAAAAATCGATTCACttaagatttctttaaaaaaacaaaaaagtgatcTTTACTGTCTAATTGAAATTCGATATAAAGCGGGTCttagaccaaacaagaagcactgcatttaattatattttatcacaccatgtctttaaaatatgtaaaatagttttacCCTAGTATTTTcgatggaatttctgcgctaggcTGTGGCTAATGACAGTGCCTACATTTAAAAGGTCTTTAGTGTCTTTTTATGCTTAACAATCAAATAGatacttaagtctatttaactgataatattttaattacattacaacattggtgttgtaaaaggaaccttttgaaatttaaaataatcacataaagctttcaccggaagttcatcattggctgaaacaCTTGGTGTTCATGTCTATTGCtttgaaaataaaactattaaaaaagcaTGCGCTATGGGCACCTGTTGATGAAAACTTTGTAAACGCAACATAACTCAGGCTAAATATTGATTAAAATGGGCTTTTTCAAACATATTGCAAACTTTAAATTGAAAGTATAACCTATAAATGCTCTAGCTTATCATTAAATATTATGCATCTGCATATAACAGTAGCCGAATGTATGATTCTTTGAGAAATTGAttgttttgtctttcttttaGCATTgtagttatgacttgtttgtagtgttATCAACATTTAGGCTAGTTGTAGATGGCTAATTTTGTCTGGGTGCAGCCTACaacattttaatgatattttggcAAGTAGAacgaaataaacaaaataacttgaaaaaagatttgttcatcttacTGAACGAGATTCAAACcactgaacttcccatcactactcaACATGCTGCAACTTaagaaaacaccagcaaataaaaataaaatgtttgtttgacagcacatgtgcaAATCCTCATTTcacaaatattttaagttttaaaacttCAAAGTGGGGTCTTCCCATGCAAGACAAGCGTGGGGCTGGTGAGGGCTTCCTGTAAAAAAGGGAGGGCTGCCCACAAAGGCATAACACCAATACTCCATTCaaatggggcttcagcgtcaacgcttgatgAAAGGCgggtctgaagttggggctgacgcaatcgtcatagcagtgtcagcaaATTAAACCAAGtctgcaatcggctactgtctgagctggggtatttgcttaaagtaatctgattggctgatgcttccattATCGCTTTAAAAGAAAttacttctgcagcaagcaacaccACTGAAGCAGCGCTGATGGACCCACAATTCAGTTCAAATCGATTGGATGCTTGAGTTACAGAAGACTCAATTTGAGTTGGGATTACCGAATTTAGATAAGGTATTTAGATATTGAAAGGTAAGGGCCTAGCTTTTTTTCCAACAAATTTTATCTATTAGAGAATTCCAAATAAATTTTCCCCTCGGAGTGATTCTTTTCTTTGACTGAAACAtgttccttttatttttattactacattTTAGGTCGTAAATGCATTTGTCTTCAACTTTTGATTTTGGATCTTTTTTGACAATTACTTTAAATGACAAGTGGCATTTTATTAAATGAGCAAGGGCATTAGGTATGGCTTTAATCACAGTAGAAAATTCTTTATGAATAACAGggaaattatatttaaacattaaatcacCATATGAATAGAAGTTCCCTTGTGGATCAAATAAATCACAAAGATAATTAATATCTTTTTAATGCCAATtcttataaaaaaatctatttattcttCACTAAGATGCGTTCGTTGTTCCATAGCTTTACTTTGTGCAGGGGAGAAATTGTGAGAGAAACATAATTTCCATGCCAGAAGAGCCTGTTCATGAAATTTAGAGAGTTTATAGGGAGTTTGGAAGGAGAAAAGCTACAAGTTAACAAAaggatgtcacccattcaaagtgaacgggaagcgttgacgctgatacCAATGCCCTGTGTGAATTGGGAGTAATGGTTATTACAGCATGCAATTTAATTTGATGGTGCTTTGCATTTATGTACTGtaattattggtaacactttacttaaagggtATGTTTAAGACAATTGTCACAATTATAATGCCTCAGGACAATAATGTTTATGACATATTTATGACGAAGATTTgggatgtatttgtttatgtcaagtttatCTTTGCagttaaaatgacataactgagcaaatgacactcaatgacagttgtcataagtaagcataaaatctcattcacattcatgacatCATGTCATAATTATAAAGGTTCCATGACAAACTTCTAAACACCCCTTTAAATCAAGTGTTacttttttatgcagtttttttttattactataaatGTAATTGTGTAATTCAAAGTGGTGTTTGTGTAATGTCCTTTTTCCAGATAGCTCCACAACAAAATCCATTGGGATAGCCGTTGCATTTGGGATTTTAGGATTGTTCGTGCTAATCTGTGTAGTGCAAATCTGCTGCAAGAAAAAGTGCTGCAAGCGTAAAAGTAAGCAAACATGAATTGATGCTAGTAGATGCTAGCAGTAGATGCTAATGTGAGCTCGTAGATATGTCGGTAAACATTAAGAAAATAATTGTGCTTCCATCTTTTCCTTGACAGAGCCTTCAGTGAAGGATAAAATTTTACAGTAAGTTTTTGTTGTGTGGTATTTAGTTTAAGATTGGGCCGTTTTTATATGTGATTCGTTTTGACTTTTGATCTGTGTGTGTCCGCAGAAAAGTCGGGATAAAGAAATCCACGCCTCCATTTTCAGTTAGCAGGATCGTCGACAAGAAATAACCGTCATCACCGCACCTATTATTCTCTCGATACCTGTAAATAGTGTATATACAGCCTAGATTCACAACACTTATTTACACATTATGATGTGAAAGTATGCGTTGGtgtatttattttcttcagtTCTTTGAAAAGTCTGAATCACGTTTTTGAGGTGAAGATGTTATTAGCAATGGGGATGTTGATGATTCATCGCTGGTTAAGATAACTTTCCCACAGATATGAAAAAGCACAGCACACTTTTATTGCTATCGAGATCGATTATCTTGTCTTTTACTCTCAATGCCTGACTCTGTTTCTGTCTATCTTGTTTTTCAATCTCATCACAAAAATACACAGGACAATTCTTCCTCTCAAGCTAAATCGTTACCACATAAATGTGAGTTTAAAGGCCAACACTTAGACTGAAGAAAAAAACTGTTGCTTCAGTTCCAGTACATGGATCATTTCTTAATCGTGGAGGAAGCAATGTCAGATGATTTAATTCCTGTTAAGTAATATTATGTGTGAGATGTAATGTTGATAAGGACTCATCAAGTATGTGGTTTATAAATAGATGTACTATAATATTTAGAAATTTCTCTGTgatgagaataaataaataaaatgtttctgagattaaaaaaaaacatgaatttcatactttttaaaagacTATACATGTCGTTTATGCTTATATTTAAcaccatgaaaaaaataaaagtggaCACTTAAATTCATACAagacatttagattttttatatgtaaaggtTTGAAAACAGTAAGTATGCTGTTATAAACATATCTGTTGCACTGAAT
>TCONS_00017845
agacAGACCAGTTTTTATATATATGGCTTTTCACAGTCTACATATGTACTCCAGGCAAGTTAGCGACACAGAAAGTTAGCACTGTTTCAGAAAAAAAGACTTCTCTGAGAGTAAAAGAACAATCATCTGGATTTAAGTTTACAAACTCTTCTGAACACATCATACGAAAGGAAAAGGCATCATGGATAGCTCCACAACAAAATCCATTGGGATAGCCGTTGCATTTGGGATTTTAGGATTGTTCGTGCTAATCTGTGTAGTGCAAATCTGCTGCAAGAAAAAGTGCTGCAAGCGTAAAAAGCCTTCAGTGAAGGATAAAATTTTACAAAAAGTCGGGATAAAGAAATCCACGCCTCCATTTTCAGTTAGCAGGATCGTCGACAAGAAATAACCGTCATCACCGCACCTATTATTCTCTCGATACCTGTAAATAGTGTATATACAGCCTAGATTCACAACACTTATTTACACATTATGATGTGAAAGTATGCGTTGGtgtatttattttcttcagtTCTTTGAAAAGTCTGAATCACGTTTTTGAGGTGAAGATGTTATTAGCAATGGGGATGTTGATGATTCATCGCTGGTTAAGATAACTTTCCCACAGATATGAAAAAGCACAGCACACTTTTATTGCTATCGAGATCGATTATCTTGTCTTTTACTCTCAATGCCTGACTCTGTTTCTGTCTATCTTGTTTTTCAATCTCATCACAAAAATACACAGGACAATTCTTCCTCTCAAGCTAAATCGTTACCACATAAATGTGAGTTTAAAGGCCAACACTTAGACTGAAGAAAAAAACTGTTGCTTCAGTTCCAGTACATGGATCATTTCTTAATCGTGGAGGAAGCAATGTCAGATGATTTAATTCCTGTTAAGTAATATTATGTGTGAGATGTAATGTTGATAAGGACTCATCAAGTATGTGGTTTATAAATAGATGTACTATAATATTTAGAAATTTCTCTGTgatgagaataaataaataaaatgtttctgagattaaaaaaaaacatgaatttcatactttttaaaagacTATACATGTCGTTTATGCTTATATTTAAcaccatgaaaaaaataaaagtggaCACTTAAATTCATACAagacatttagattttttatatgtaaaggtTTGAAAACAGTAAGTATGCTGTTATAAACATATCTGTTGCACTGAAT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019127 False 1138 lncRNA 0.34 4 12410984 12416090
TCONS_00019128 False 5125 lncRNA 0.33 1 12410984 12416108
TCONS_00017845 True 1190 lncRNA 0.34 4 12410984 12416138

Neighbor

gene id symbol gene type direction distance location
XLOC_009056 tmprss13a coding downstream 50575 12326161 ~ 12360409 (-)
XLOC_009055 fxyd6 coding downstream 91850 12273947 ~ 12319134 (-)
XLOC_009054 si:dkey-36i7.3 coding downstream 140127 12251044 ~ 12270857 (-)
XLOC_009053 dscaml1 coding downstream 181110 12071037 ~ 12229874 (-)
XLOC_009052 si:dkey-202l22.6 coding downstream 399594 12004777 ~ 12011390 (-)
XLOC_009058 scn4ba coding upstream 50714 12466852 ~ 12500938 (-)
XLOC_009059 NA coding upstream 100050 12516188 ~ 12545683 (-)
XLOC_009060 zgc:172282 coding upstream 691204 13107342 ~ 13254480 (-)
XLOC_009061 BX897750.1 coding upstream 1408334 13824472 ~ 13824604 (-)
XLOC_009062 NA coding upstream 1618116 14034254 ~ 14038227 (-)
XLOC_009051 NA non-coding downstream 418081 11989063 ~ 11992903 (-)
XLOC_009050 CR848025.1 non-coding downstream 434724 11976143 ~ 11976260 (-)
XLOC_009048 NA non-coding downstream 535028 11870184 ~ 11875956 (-)
XLOC_009047 NA non-coding downstream 585103 11818484 ~ 11825881 (-)
XLOC_009045 NA non-coding downstream 987880 11414691 ~ 11423104 (-)
XLOC_009063 NA non-coding upstream 1646475 14062613 ~ 14064350 (-)
XLOC_009068 NA non-coding upstream 1813110 14229248 ~ 14232070 (-)
XLOC_009069 NA non-coding upstream 1829952 14246090 ~ 14248047 (-)

Expression


Co-expression Network