CI01000039_04065787_04066284


Basic Information

Item Value
gene id CI01000039_04065787_04066284
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4065669 ~ 4066653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204537
GCAAGACAGCTCATTTACTCACATTTGGTCAGCTGACTGGTTTAAGTTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCTATCGTTGTTACTGAAGGGCAGCCTGGGTTTGGACTCCAAAGATGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGAAGCTGACTGGTTTAAGGTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCCATTGCTGTTATTGAAGGGCAGCCTGGGTTCGGACACCAAAGGTGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGATTGAAAATAAGACCAAGAGTGCTCAGTAAAAACTGAAGTGGTTCAACTGCATTTTCAAGTGTGAAGGTTGTGGCCATGTGGACATTCATTAAACAGTCATTAAAAAGCTGTATTGATTATTTTTTGTATTACAATAAAATATTTTATATATTATTTAAGTTATGAGTAGTTTATTGTATTTTTTTTTTATAAAAAAAAAACTGTTATCATATGTTCTTCTGTTCATGTCTATTTTTATTGTCAGAGAAAAGTTTCAAATAAAATCTTGTCAAGGTTTCA
>TU204539
GCAAGACAGCTCATTTACTCACATTTGGTCAGCTGACTGGTTTAAGTTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCTATCGTTGTTACTGAAGGGCAGCCTGGGTTTGGACTCCAAAGATGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGATTGAAAATAAGACCAAGAGTGCTCAGTAAAAACTGAAGTGGTTCAACTGCATTTTCAAGTGTGAAGGTTGTGGCCATGTGGACATTCATTAAACAGTCATTAAAAAGCTGTATTGATTATTTTTTGTATTACAATAAAATATTTTATATATTATTTAAGTTATGAGTAGTTTATTGTATTTTTTTTTTATAAAAAAAAAACTGTTATCATATGTTCTTCTGTTCATGTCTATTTTTATTGTCAGAGAAAAGTTTCAAATAAAATCTTGTCAAGGTTTCA
>TU204540
GCAAGACAGCTCATTTACTCACATTTGGTCAGCTGACTGGTTTAAGTTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCTATCGTTGTTACTGAAGGGCAGCCTGGGTTTGGACTCCAAAGATGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGATTGAAAATAAGACCAAGAGTGCTCAGTAAAAACTGAAGTGGTTCAACTGCATTTTCAAGTGTGAAGGTTGTGGCCATGTGGACATTCATTAAACAGTCATTAAAAAGCTGTATTGATTATTTTTTGTATTACAATAAAATATTTTATATATTATTTAAGTTATGAGTAGTTTATTGTATTTTTTTTTTATAAAAAAAAAACTGTTATCATATGTTCTTCTGTTCATGTCTATTTTTATTGTCAGAGAAAAGTTTCAAATAAAATCTTGTCAAGGTTTCA
>TU204541
GCAAGACAGCTCATTTACTCACATTTGGTCAGCTGACTGGTTTAAGTTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCTATCGTTGTTACTGAAGGGCAGCCTGGGTTTGGACTCCAAAGATGTTTATGTCGAGGTACATTTGGTCAGCTGACTGGTTTAAGGTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCCATTGCTGTTATTGAAGGGCAGCCTGGGTTCGGACACCAAAGGTGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGATTGAAAATAAGACCAAGAGTGCTCAGTAAAAACTGAAGTGGTTCAACTGCATTTTCAAGTGTGAAGGTTGTGGCCATGTGGACATTCATTAAACAGTCATTAAAAAGCTGTATTGATTATTTTTTGTATTACAATAAAATATTTTATATATTATTTAAGTTATGAGTAGTTTATTGTATTTTTTTTTTATAAAAAAAAAACTGTTATCATATGTTCTTCTGTTCATGTCTATTTTTATTGTCAGAGAAAAGTTTCAAATAAAATCTTGTCAAGGTTTCA
>CI01000039_04065787_04066284.mRNA
GTATAAAATGAAGCAAGTCAGTTCATTTACTTACATTTGGTCAGCTGACTGGTTTAAGGTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCCATTGCTGTTATTGAAGGGCAGCCTGGGTTCGGACACCAAAGGTGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGATTGAAAATAAGACCAAGTGAGTCTTATAAGTGACATTACAACTGATACTGAAACTTCATATCTTTCTTATGTTAAAAATGAAGAAAGGATAACAGAATAATGTTTATTTATGTTTATTCTTTTTAGGAGTGCTCAGTAAAAACTGAAGTGGTTCAACTGCATTTTCAAGTGTGAAGGTTGTGGCCATGTGGACATTCATTAAACAGTCATTAAAAAGCTGTATTGATTATTTTTTGTATTACAATAAAATATTTTATATATTATTTAAGTTATGAGTAGTTTATTGTATTTTTTTTTTATAAAAAAAAAACTGTTATCATATGTTCTTCTGTTCATGTCTATTTTTATTGTCAGAGAAAAGTTTCAA
>TU204535
GCACTGAAGCATCAAATAGGGGAATCCCAGACTGTCTTAGATTTGTATAAAATGAAGCAAGTCAGTTCATTTACTTACATTTGGTCAGCTGACTGGTTTAAGGTGCAGAGATTGAACAATGAAGTCTGTGGCTGCTCTACTTGTTTTTGTCAGTTTGGCCATTGCTGTTATTGAAGGGCAGCCTGGGTTCGGACACCAAAGGTGTTTATGTCGAGGTGCTGGTGCCAAAATGGTGAGGCCAAAGCTGATAGAGAAGGTGGAAATTCACCCTGTTAGTCCATCTTGTGGACATCTGGAAGTTGTTGTCACGCTGAAGAATGGTGCAGGGCGAAGATGCTTAAACCCAGAGTCATTGTTTACCAAGAATATCATTGAGAGGATTGAAAATAAGACCAAGAGTGCTCAGTAAAAACTGAAGTGGTTCAACTGCATTTTCAAGTGTGAAGGTTGTGGCCATGTGGACATTCATTAAACAGTCATTAAAAAGCTGTATTGATTATTTTTTGTATTACAATAAAATATTTTATATATTATTTAAGTTATGAGTAGTTTATTGTATTTTTTTTTTATAAAAAAAAAACTGTTATCATATGTTCTTCTGTTCATGTCTATTTTTATTGTCAGAGAAAAGTTTCAAATAAAATCTTGTCAAGGTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204537 False 573 lncRNA 0.39 4 4065755 4066653
TU204539 True 263 lncRNA 0.36 1 4066391 4066653
TU204540 False 356 lncRNA 0.36 2 4066188 4066653
TU204541 True 584 lncRNA 0.38 4 4065744 4066653
CI01000039_04065787_04066284.mRNA False 703 mRNA 0.34 3 4065713 4066631
TU204535 False 659 lncRNA 0.36 4 4065669 4066653

Neighbor

gene id symbol gene type direction distance location
CI01000039_04062068_04062375 NA coding upstream 2775 4062003 ~ 4062961 (+)
CI01000039_04058417_04059141 NA coding upstream 6210 4058343 ~ 4059526 (+)
CI01000039_04048342_04049635 NA coding upstream 15750 4048079 ~ 4049972 (+)
CI01000039_04017602_04018203 GRSF1 coding upstream 47245 4017602 ~ 4018468 (+)
CI01000039_04011515_04015116 GRSF1 coding upstream 50597 4011449 ~ 4015116 (+)
CI01000039_04070151_04075216 NA coding downstream 3520 4070098 ~ 4075361 (+)
CI01000039_04078795_04079273 NA coding downstream 12164 4078745 ~ 4079273 (+)
CI01000039_04108687_04120437 FLOT2A, FLT2, FLOT2B, FLOT2 coding downstream 42056 4108687 ~ 4120437 (+)
CI01000039_04198172_04200073 FAM222BA coding downstream 130615 4197246 ~ 4200160 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L coding downstream 157257 4223868 ~ 4224657 (+)
G180111 NA non-coding upstream 90013 3975058 ~ 3975700 (+)
G180109 NA non-coding upstream 91568 3973909 ~ 3974145 (+)
G180108 NA non-coding upstream 94049 3971459 ~ 3971664 (+)
G180107 NA non-coding upstream 97707 3967683 ~ 3968006 (+)
G180106 NA non-coding upstream 99788 3965654 ~ 3965925 (+)
G180155 NA non-coding downstream 22340 4088971 ~ 4089226 (+)
G180156 NA non-coding downstream 24471 4090998 ~ 4091608 (+)
G180157 NA non-coding downstream 25857 4092488 ~ 4092835 (+)
G180160 NA non-coding downstream 58917 4125548 ~ 4125931 (+)
G180185 NA non-coding downstream 62623 4129254 ~ 4129494 (+)
G179903 NA other upstream 640158 3424037 ~ 3425555 (+)
G179798 NA other upstream 933529 3129572 ~ 3132184 (+)
G179528 NA other upstream 1567094 2497674 ~ 2498619 (+)
G178423 NA other upstream 3079961 966676 ~ 982406 (+)
G180149 NA other downstream 8245 4079419 ~ 4079563 (+)
CI01000039_04829464_04847182 ZFR other downstream 777551 4829413 ~ 4848563 (+)
CI01000039_07324920_07329407 NA other downstream 3254053 7324596 ~ 7329472 (+)

Expression


Co-expression Network