CI01000039_04240525_04242132 (RPS27A, UBB, UBC)


Basic Information

Item Value
gene id CI01000039_04240525_04242132
gene name RPS27A, UBB, UBC
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4240357 ~ 4242404 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_04240525_04242132.mRNA
AGATTTTCTTTGAAGCAGAGGACGTGTATATTTTCAGAAGCAATTTCCGTTTCACGATCAACAAGCTTGTTAAAAGGTAAGAATCAACATTTAGTTGTTTTTATATCATTGTTAAAGACTTTAATAATACATTCTTATTGTTTTGTTATTCTTGTGGGTATTGTATTGATTCTCGGCGGTCGTTTTCTGGATATCTAAACGTATTGACTGACCTGCATTATATTGTTAAAAATGCGTTCGTCTAAGTAATGAGCGCAACAGCTTACGTTACTGAAATTGATGTTTTATTCTTAATTGTGAAGTTCTTGTATTTTGCTTTCGATATGATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGATTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCCTGTCGCAAACAGCTGGAAGATGGTCGCACACTGTCCGACTACAACATCCAGAAAGAGTCTACCTTGCATCTGGTGCTGCGTCTCAGAGGAGGTTCAGATGTTTAAACTGACAGTCTCAAGGATGAACATTTAATTCTTTCAGTAATCCCCATGCACTCACCACTTTTCTCCTATTCTCTCCATACTTTAACTGAATCCTATTACATTTATTAGTTTTTTTTTTTTTTTTTTTCCACCTGTTTTTTATTTTTATTTTTTTATCTTGATGACAAAATAAA
>TU205375
ACAGTTTCATTCGCATTCAACGACAGATTTTCTTTGAAGCAGAGGACGTGTATATTTTCAGAAGCAATTTCCGTTTCACGATCAACAAGCTTGTTAAAAGATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGATTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCCGACTACAACATCCAGAAAGAGTCTACCTTGCATCTGGTGCTGCGTCTCAGAGGAGGTTCAGATGTTTAAACTGACAGTCTCAAGGATGAACATTTAATTCTTTCAGTAATCCCCATGCACTCACCACTTTTCTCCTATTCTCTCCATACTTTAACTGAATCCTATTACATTTATTAGTTTTTTTTTTTTTTTTTTTCCACCTGTTTTTTATTTTTATTTTTTTATCTTGATG
>TU205376
ACAGTTTCATTCGCATTCAACGACAGATTTTCTTTGAAGCAGAGGACGTGTATATTTTCAGAAGCAATTTCCGTTTCACGATCAACAAGCTTGTTAAAAGATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGATTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCCTGTCGGACTACAACATCCAGAAAGAGTCTACCTTGCATCTGGTGCTGCGTCTCAGAGGAGGTTCAGATGTTTAAACTGACAGTCTCAAGGATGAACATTTAATTCTTTCAGTAATCCCCATGCACTCACCACTTTTCTCCTATTCTCTCCATACTTTAACTGAATCCTATTACATTTATTAGTTTTTTTTTTTTTTTTTTTCCACCTGTTTTTTATTTTTATTTTTTTATCTTGATG

Function

symbol description
ubb Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C).
ubc Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C).
rps27a Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

GO:

id name namespace
GO:0022627 cytosolic small ribosomal subunit cellular_component

KEGG:

id description
K04551 UBB; ubiquitin B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_04240525_04242132.mRNA False 770 mRNA 0.37 2 4240357 4242380
TU205375 False 503 TUCP 0.40 3 4240367 4242404
TU205376 True 503 TUCP 0.40 3 4240367 4242404

Neighbor

gene id symbol gene type direction distance location
CI01000039_04226208_04237758 P2RX5 coding downstream 2428 4225606 ~ 4237929 (-)
CI01000039_04215160_04222618 SHPK coding downstream 17739 4214798 ~ 4222618 (-)
CI01000039_04204201_04210677 NA coding downstream 29350 4203837 ~ 4211007 (-)
CI01000039_04193747_04197136 NA coding downstream 43148 4193104 ~ 4197209 (-)
CI01000039_04137173_04144306 NA coding downstream 96051 4136303 ~ 4144306 (-)
CI01000039_04250299_04276653 NA coding upstream 7765 4250145 ~ 4277181 (-)
CI01000039_04400748_04401161 NA coding upstream 157431 4399811 ~ 4401221 (-)
CI01000039_04436085_04440389 NA coding upstream 192322 4434702 ~ 4440725 (-)
CI01000039_04473968_04477099 BCL7A coding upstream 231520 4473900 ~ 4477099 (-)
CI01000039_04478095_04490812 NA coding upstream 235715 4478095 ~ 4491059 (-)
G180884 NA non-coding downstream 104981 4134377 ~ 4135376 (-)
G180886 NA non-coding downstream 108023 4132054 ~ 4132334 (-)
CI01000039_04123871_04130647 NA non-coding downstream 116408 4123228 ~ 4131168 (-)
G180850 NA non-coding downstream 147496 4092498 ~ 4092861 (-)
G180848 NA non-coding downstream 148841 4091091 ~ 4091516 (-)
G180873 NA non-coding upstream 6346 4248726 ~ 4249077 (-)
G180954 NA non-coding upstream 149514 4391894 ~ 4394418 (-)
G180955 NA non-coding upstream 153235 4395615 ~ 4395874 (-)
G180956 NA non-coding upstream 156050 4398430 ~ 4398671 (-)
G180961 NA non-coding upstream 161266 4403646 ~ 4404053 (-)
G180346 NA other downstream 1882750 2357204 ~ 2357607 (-)
G180953 NA other upstream 142486 4384866 ~ 4389529 (-)
G182384 NA other upstream 1214111 5456491 ~ 5469288 (-)
G182470 NA other upstream 1393678 5636058 ~ 5636764 (-)
G182771 NA other upstream 2265575 6507955 ~ 6508433 (-)

Expression


Co-expression Network