CI01000039_04244908_04247540 (CENPV)


Basic Information

Item Value
gene id CI01000039_04244908_04247540
gene name CENPV
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4244504 ~ 4247540 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_04244908_04247540.mRNA
CAATAAAAACAAGTTTTACTTTCTGTTTTATTTAACAACACACTGTCCCCAAAAGTGTCATGTGACATAGGATATCTGTATGAGGCTATACATTATTTGTTTATATTTATACTACTCTACAGTTCAGTCTATTTCGAAGAAATGTTTTTCTTTCTGCTCTGATATTATCCTGGACTTGGTCTGGGCTCTTGCAACAGCTGAACGGGTGGAACAAGATGACGCCGAGGGCAAAATGAGCTGGCTGAAGCATGTGACCCAGCCAGTCAACAGTGTGTGTTTTGCAAGCAGGGTGATGGTTATCAAACAGTATGAATGTTCTACAGGAAAGCGTGACTTATCAGTTTAAACCGGTTAGGTTGTAGACGACAAACAACCCCACCTTTCACAAATATAAAGTTAAAGGAATGGCGTGCGTAACTAAAGACGAAAGGGAGCGTGATGGTCTTGTGAAACACACCGGAGGTTGCCACTGCGGCGCGGTGCGTTTTGAGGTGTGGAGTGCCCCAGATTTACACGTGTTCAATTGCAATTGCAGTATTTGCACAAAGAAACAGAATCGTCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGCTCAGACAACATTACCACGTACACATTTAACACACACATGGCCAAGCACACATTCTGCAAAACTTGCGGAGTCCAGAGTTTCTACACTCCACGTTCCAACCCTGATGGATATGGTGTGGCACCTCATTGTTTGGACCCTGGAACAGTGAGAAGTGTGACTGTGGAGGATTTCTGTGGGGAAACCTGGGAAGAAAGTATGCAGAAGCATCAGACTATTAGAA

Function

symbol description
cenpv Predicted to enable carbon-sulfur lyase activity and metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; motor neurons; muscle; retinal outer nuclear layer; and trunk musculature. Orthologous to human CENPV (centromere protein V).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_04244908_04247540.mRNA True 822 mRNA 0.44 5 4244504 4247540

Neighbor

gene id symbol gene type direction distance location
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L coding upstream 19868 4223868 ~ 4224657 (+)
CI01000039_04198172_04200073 FAM222BA coding upstream 44344 4197246 ~ 4200160 (+)
CI01000039_04108687_04120437 FLOT2A, FLT2, FLOT2B, FLOT2 coding upstream 124067 4108687 ~ 4120437 (+)
CI01000039_04078795_04079273 NA coding upstream 165231 4078745 ~ 4079273 (+)
CI01000039_04070151_04075216 NA coding upstream 169143 4070098 ~ 4075361 (+)
CI01000039_04295776_04307914 NCOR1 coding downstream 48236 4295776 ~ 4307914 (+)
CI01000039_04364813_04366029 NA coding downstream 116629 4364169 ~ 4366231 (+)
CI01000039_04370566_04373090 NA coding downstream 122087 4369627 ~ 4373462 (+)
CI01000039_04384983_04394003 NA coding downstream 137280 4384820 ~ 4394124 (+)
CI01000039_04422021_04434173 NA coding downstream 174319 4421859 ~ 4434227 (+)
G180196 NA non-coding upstream 1 4244239 ~ 4244503 (+)
G180161 NA non-coding upstream 2141 4240313 ~ 4242363 (+)
G180195 NA non-coding upstream 4997 4239280 ~ 4239507 (+)
G180180 NA non-coding upstream 21778 4222478 ~ 4222726 (+)
G180191 NA non-coding upstream 24657 4219148 ~ 4219847 (+)
G180166 NA non-coding downstream 1934 4249474 ~ 4252262 (+)
G180210 NA non-coding downstream 159483 4407023 ~ 4407280 (+)
G180212 NA non-coding downstream 161982 4409522 ~ 4409756 (+)
G180223 NA non-coding downstream 170708 4418248 ~ 4418651 (+)
G180224 NA non-coding downstream 173060 4420600 ~ 4420946 (+)
G180156 NA other upstream 152896 4090998 ~ 4091608 (+)
G180149 NA other upstream 164941 4079419 ~ 4079563 (+)
CI01000039_04048342_04049635 NA other upstream 194532 4048079 ~ 4049972 (+)
G179903 NA other upstream 818949 3424037 ~ 3425555 (+)
CI01000039_04829464_04847182 ZFR other downstream 596642 4829413 ~ 4848563 (+)
CI01000039_07324920_07329407 NA other downstream 3073144 7324596 ~ 7329472 (+)
CI01000039_07898330_07904918 DPF2 other downstream 3648336 7896773 ~ 7905162 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031327 cenpv coding NC_007116.7 CM002889.2 42022826 ~ 42071619 (-)