CI01000039_05327866_05343471


Basic Information

Item Value
gene id CI01000039_05327866_05343471
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 5326608 ~ 5343471 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_05327866_05343471.mRNA
TGTCTCCAGAAATTGTGCTGTAAGGCCCCCCCTCCACCTAGACCGGAGTATGATGTAGTGTGCATTGGACTGAGCGGTGCCGGCAAGACCAGTCTGCTATCTCGCTTGTGCAATGAGATCAGTGATGGCACGATACCAACCACAGAACATCTGGGTTTTGTCACACAGACTTTATTCCTTGTGAAAAGAGTGTTGATTTCATTAGTGCTCTTGGCGACAGGTTTCAGCATCAAGGCAGTGCCATTTGAAAATGCGATACTGAATGTGAAGGAACTAGGAGATACAAAGCCACAGATACAGTGTTGGAAGATGCTTGTTGTTGTAGGATTGCTGAACAGAAAGAAGTCTGTGGAGAGAGAAATAAATCAGAGCCCGACTCTGTTTATGAGAATGTTAGGGGAGCTTCTCTTTGAAGTGATTTATGTGTTTTGTGGGACGTGGGGGGACATTACAGTCAATTTAATTGACTTTGAGAAAGCATTCGACAGCATTCACCACGATTCACTCTGGCAAATCTATCATAACTCAAAGTGTTGCTTCCAAACTGACATGGGAACATCTGAGATCTTTGACGTTGTGACAGGTGTCAGGCAAGCGTGCATTTTGTCACCCCTGCTGTTCCTGCTCACCATAGACTATGTCATGCGGAACACAGCAAGTGGAAATGACTGCGTCATTTCATGGACAGACCAGACAAGTTTGGCCGATCTGGACTTCACAGATGATATCGCATTACTAGCAGAGTCACGGGAGAAGCTACAGCAACTTACCACCAGGTTAGAAAGGTTTGTGCTTAAGATGGGTCTGTGGATCAACATCAAAAACATCCAAGTGATGCAAATGAGCAGGAAAGACAAATATCTACTGATGCTAGTCCCATTGGCAAACTGCCGCTTGCTGATATAGACCGGTTTACATACTTGGGCAGTGTGATCACACAGGACGGTGACGCAGAGCCAGACGTAAACCAGCACATTGGCAAGGCAGCCAATTTGTTCCAACGGATGTGCAACATCTGGATATTACCCAGCATTAGGACAACTCAGGATCCGCCTCTATCCACCTTTTTCCTGATAAGCCTACTACATTTTGGATTATGAGAGGCACTTCCGGTTTGGGGAAGTTCCACTCAAAAAGACTGAAACAAATCATTTCAAATCATAAGGTTGCAAATAATCCTTATCTGTCAGTTTGACTGAACGAGCTGTAAAATGTCCTTCACATTCGATTTTCAGACGTCAGGAGAATAATGTAACACTTGGGGCCAGATTTACTAACAACTTGCTCCAGCGCAAAATACGGTGGCCGAGAGAGCTCAACTGAAAACAAACAAACATGCAAATAGAAAAAACACCAGCAAATAAAGAAAACATCTTCATCAGTTTGACAACACATGCGCTGCAAAGGTTCACAACACATGAAAATACAGAAACGCGCTGAAAAAGTTCACAACACATGCAAACACAGAAATGCACTGCAAAAGTTCACAACACATGCAAACACAGAAATGCACTGCAAAAGTTCACAACACATGCAAACACAAAAACGCGCTGCAAAAGTTCACAACACATGCAAATACAAAAACGCGTTGCAAAAGTTTACAACACATGCAAATACAAAAACCCGTTGCAAAAGTTCACAACACATGCAAATACAAAAACGCGTTGCAAAAGTTTACAACACATGCAAATACAGAAACGTGCTGCAAATAGCACATACCAGGCCCTGTGATCTCAATCCCCCCTCTGCGATGATCGGAATGATGATGATGATGATGATGAGGATGATTAGGCTACTTTTAGAATTAAATTAATATTTTAATTTGCCCCGCAATAATTTATAGTGCATCATGCATAACCGACGCGCTGTAATAAGATTAGCTAACTCCTCATTTAAAAAAAACAACTTGTTTAACACCTACATCACCTACATTTTTTCACTACATATGGGCCACAAGAGAAATATTAAGAAATAAATTAAAGTTAAATAGTGTTATCAGAACATGTTGAAGCAGCACTCTCATCGCTGAGTTTTTAGTTTCACTTTCTGCAGTGAATAATTGACTGGGATTTGAGACATAAAATCAAGTAAATTATTATATATATATATATATATATATTTATTATAAATAATTTATTAATAATATTTTTTAACGCAAAATAAT

Function

NR:

description
Arl15b protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_05327866_05343471.mRNA True 2164 mRNA 0.40 5 5326608 5343471

Neighbor

gene id symbol gene type direction distance location
CI01000039_05298355_05313755 NA coding downstream 12820 5298201 ~ 5313788 (-)
CI01000039_05231247_05234144 NA coding downstream 92464 5231099 ~ 5234144 (-)
CI01000039_05204187_05205884 NDUFS4 coding downstream 120724 5201021 ~ 5205884 (-)
CI01000039_05012573_05014491 NA coding downstream 311785 5012505 ~ 5014823 (-)
CI01000039_04917173_04926003 NA coding downstream 400305 4916312 ~ 4926303 (-)
CI01000039_05428966_05446948 NA coding upstream 84461 5427932 ~ 5446948 (-)
CI01000039_05564105_05568438 TMEM175 coding upstream 219501 5562972 ~ 5568720 (-)
CI01000039_05691143_05694780 BMP3 coding upstream 346647 5690118 ~ 5695149 (-)
CI01000039_05696229_05731472 CUNH4ORF22 coding upstream 352134 5695605 ~ 5731659 (-)
CI01000039_05751997_05758120 NA coding upstream 407155 5750626 ~ 5758589 (-)
G181385 NA non-coding downstream 180436 5145963 ~ 5146172 (-)
G181331 NA non-coding downstream 306181 5020192 ~ 5020427 (-)
G181330 NA non-coding downstream 306433 5019960 ~ 5020175 (-)
G181309 NA non-coding downstream 345560 4967014 ~ 4981048 (-)
G182348 NA non-coding upstream 38485 5381956 ~ 5382630 (-)
G182363 NA non-coding upstream 54352 5397823 ~ 5398031 (-)
G182364 NA non-coding upstream 54626 5398097 ~ 5398469 (-)
G182365 NA non-coding upstream 55578 5399049 ~ 5399774 (-)
G182411 NA non-coding upstream 150738 5494209 ~ 5495402 (-)
CI01000039_04478095_04490812 NA other downstream 835549 4478095 ~ 4491059 (-)
G180953 NA other downstream 937079 4384866 ~ 4389529 (-)
CI01000039_04240525_04242132 RPS27A, UBB, UBC other downstream 1084204 4240357 ~ 4242404 (-)
G180346 NA other downstream 2969001 2357204 ~ 2357607 (-)
G182384 NA other upstream 113020 5456491 ~ 5469288 (-)
G182470 NA other upstream 292587 5636058 ~ 5636764 (-)
G182771 NA other upstream 1164484 6507955 ~ 6508433 (-)
G182827 NA other upstream 1291076 6634547 ~ 6635200 (-)
CI01000039_06647926_06651530 NA other upstream 1304056 6646544 ~ 6653449 (-)

Expression


Co-expression Network