CI01000039_06282705_06284628


Basic Information

Item Value
gene id CI01000039_06282705_06284628
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6281904 ~ 6284931 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_06282705_06284628.mRNA
GAATATAAACAGCCCTCCAGTCATTGTTATATTCAGGGGAGAAGGGACTTCTCTATTATGGACACTTAGTCAAAACTGTCTTCCTTAACCAAAGGGAATATAAACAGCACTATGAAATGCACATGTAAAGAAGGCTGAGTGAAGCACTTCAAGTGTGCTTTGTTAATTGTTTCAGTTCATCTGAATGGTTGGGATTTTATTCTATCAGAAAATGCTAACTATTAAAGTGTAACTGATTTTTAACCTTTTTTTTTTATTGTTGTCAATATGTATATGTAGATGAACAATGTTTTCAGGTTTTTCAGTTGTGGCATTCTCTCTGTATTTACAATTCTTTGCAGTCTTTAGCCACTGCCTAAAATATGCTGGATCCTTAAATGGAAACCGAAAGTAACTCACTTAACTCGCTAAATATTTACTCTTTGAATTCTTGCACCCAGGAACAATACAAGTGGACACCATTATAACTAAAAGTTTGCAAAGAAGTATTTCCTACTAAAGCAAGTTGCTATTTGACTCTGGTAAGCGTATCCATAGCAGACTGGTGGGAGTGGCAATGGACGGCCGCATACCCTGTACATTATGGGTGTTGAAGTTTTCCTACTTATTTGGCAAAAGGGAGACAAAAGACAAAATTATTTTAGCCTTTCTACTGTATAGGCAGCCAAGTTTTATTGAAAGTCCATTTTGCCAGTGAAATACCCCTTTAACCAAGTGCCTGCATTTTCCTCTTTTTTTACAGGTAACTGGGACAGGGGAAAGCTTTAAAATATCCCCTGCTCCTGATTGGTTCTCTATACCATGAGCTCTGGCTCCGCCCAGGATGTGGCGGTGGAGAATTTCCTGCGTGACATAGAGAGGCGGGGCCAGTGGCTGCACTGCGCTGTTATTGGCTGTGAGGAGGAGCATTCCCGTGGCGACATGAACCTGTTGTACCGCAAAAGTCGTCTGGACTGGAGACACAGAGATCAGGAGGGCAAGAAAAGACGTAAAGAGATACACAAGAGGTCACCCACGCATGCTCGCTTTCTGTCTGGAGGATCTGTCCACTTCCTCTCTCGTCCTCCCACTCAATCCCTCCATCCTCCTCCTCTCTGCTGCTGAATGCAGATGATTCTCATTCATTTATCCATCTCTTCCTTTTCCCCTCTGCTTTTCTCGCATCTTGCTGTCAGTCTTTGTATTTGAGTGGCAGCAGATGAATGAATGAATCAAGTGAATCATTTAGTATGTCAGTAAACTGATTCTGCACTCTAATGTGCCTTTAAACTAGAGACTCAGAGAAAGCCATGCAAAAGCCACATGTTGTGTAGCCTTAAGCAAAACAACAGAAATAGAGCAGACATAAATCGCTTCAGTTTCCTGTACCTTTGAGCTTTCATTCTGCCACGTGAAGCATCGTGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_06282705_06284628.mRNA True 1407 mRNA 0.42 2 6281904 6284931

Neighbor

gene id symbol gene type direction distance location
CI01000039_06251772_06253349 ZNHIT1 coding upstream 28446 6251582 ~ 6253458 (+)
CI01000039_06153269_06173038 CNOT6L coding upstream 108254 6153269 ~ 6173650 (+)
CI01000039_05968444_05976128 PAQR3B, MGC84726, PAQR3, PAQR3A, PAQR3.S coding upstream 305285 5968444 ~ 5976619 (+)
CI01000039_05808392_05814950 NA coding upstream 466926 5807558 ~ 5814978 (+)
CI01000039_05792540_05804737 NA coding upstream 476900 5792136 ~ 5805004 (+)
CI01000039_06288292_06297288 NYAP1 coding downstream 3231 6288162 ~ 6297446 (+)
CI01000039_06313617_06317466 ATP1B2B coding downstream 28502 6313433 ~ 6318745 (+)
CI01000039_06436994_06439467 PTGER4B coding downstream 152063 6436994 ~ 6439604 (+)
CI01000039_06472455_06491979 ERLIN2.S, ERLN2, ERLIN2 coding downstream 187524 6472455 ~ 6492462 (+)
CI01000039_06517676_06525898 NA coding downstream 232595 6517526 ~ 6525947 (+)
G181691 NA non-coding upstream 43759 6237690 ~ 6238145 (+)
G181689 NA non-coding upstream 49239 6232432 ~ 6232665 (+)
G181686 NA non-coding upstream 52840 6228783 ~ 6229064 (+)
G181681 NA non-coding upstream 64926 6216553 ~ 6216978 (+)
G181680 NA non-coding upstream 76904 6203287 ~ 6205000 (+)
G181697 NA non-coding downstream 50736 6335667 ~ 6336006 (+)
G181702 NA non-coding downstream 72594 6357525 ~ 6357792 (+)
G181703 NA non-coding downstream 73320 6358251 ~ 6358484 (+)
G181718 NA non-coding downstream 99722 6384653 ~ 6384868 (+)
G181720 NA non-coding downstream 102286 6387217 ~ 6387419 (+)
CI01000039_04829464_04847182 ZFR other upstream 1433341 4829413 ~ 4848563 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other upstream 2057247 4223868 ~ 4224657 (+)
G180156 NA other upstream 2190296 4090998 ~ 4091608 (+)
G180149 NA other upstream 2202341 4079419 ~ 4079563 (+)
CI01000039_04048342_04049635 NA other upstream 2231932 4048079 ~ 4049972 (+)
CI01000039_07324920_07329407 NA other downstream 1035753 7324596 ~ 7329472 (+)
CI01000039_07898330_07904918 DPF2 other downstream 1610945 7896773 ~ 7905162 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110537386 LOC106567871 misc NC_048576.1 CM023230.2 29698677 ~ 29726867 (+)