CI01000039_06677303_06686187 (AR)


Basic Information

Item Value
gene id CI01000039_06677303_06686187
gene name AR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6677303 ~ 6686864 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_06677303_06686187.mRNA
TCTGTCTATACAGCCTATGTGAAGCTGAAGCAAACTCAGACAAAAGCTTTAGATCTCGGTTCTACTCCATACAGCAATACTGCAAACCTAGCCCGCAAGCTGAGGAAGATTGGACAGATGAAAGGTCCGGAGGAGGTTGGCTCCATTCAGGGCCCGTCAGAGACAGTCCAGTGCCTGTCGCCTAAGCCCAGCCTGACGTTCCACTCGCAGCTGATCTTCCTGAACATCCTGGAGGCCATCGAGCCAGAGGTGGTGAACGCTGGCCACGATCACGCTCAGCCTGACTCGGCGGCCGCTCTCCTCACCAGCCTTAACGAGTTGGGTGAGAGGCAACTTGTCAAGGTAGTGAAATGGGCCAAAGGACTTCCAGGTTTCCGTAACCTGCATGTGGATGATCAGATGACAGTCATACAACACACTTGGATGGGAGTGATGGTCTTTGCTCTGGGTTGGAGATCCTACAAGAACGCCAATGCGCGCATGCTGTACTTCGCTCCAGACCTGGTCTTCAATGAGAGAACTCAGGTGAACAGGCATATAAAACATAAAGGTCATCAGGCCAAAGAACAGGCATTTCAGTCAACAAGCAGCATAATTTCTATTTGTGCTGTTCCAGTGGAGGGGCTGAAGAGTCAGAAGTATTTTGATGAGCTGCGTCTGACATACATAAACGAGCTTGATCGTTTAATCAACTATGGCAGGAAGACCAACTGTGCCATGCGCTTCCAACAGCTGACCCGACTGATGGACTCGCTGCAACCAATTGTTCAGAAGTTGCACCAGTTCACCTTTGACCTCTTTGTCCAAGCCCGGTCCCTGCCCACAAAGATCAGCTTTCCAGAAATGATTGCAGAAATAATCTCGGTCCAGGTGCCAAAGATCCTTGCTGGCCTGTCTAAACCAATTCTGTTTCACAAATGACACGACTACGCCCCTGAACCACCGATCCATACCAACCCCATCCAGGCCATATGAGCCAGTCTGTTCGGCCTGATCCAGTTTGATCCAGCCTAAACCAGCCTGCGATGCTTTTAATCTGGACTTGAGTCGAGCGATGAGACTGAAACGATACTGATTTTTTGATTTTCTCACTCTAACCTCCCTCCCTTTCTATATCAGTCTCGCCTCCCTCATTTTGAAAAATGGCCCTGAAAAGTAGCGGGACCATTACATCATTACAGTTGTCTATCTTCTCCTCAGAGATCATTTGAGCTCATTTTCTCAAACTGACAGCATGGTTTTGTTCTTTCTTTCGACCAGCAGTTATCCTTCAAGAGTTACAGCGTGTTGCCGGTGGACATGTTGGAAAAAATATCACACTGAAGTTTCTTCTAAGCCCTTAATCAAAAAAGGAAAAAAAATTACAAAAAGGGCCGTTACACAGATCCTTATCAGAGTCTGTGACCTGCCTTGACTCTCTATGCATCGTGGGATAAAAAGGTTAATTTATTGTCTGTGACTTGAGAGATCAGGACAAATCAAAGCTACATGCATAGCGAAATACATCGGAACATGGCGAAAACCAAGACGAATCTTTGTGACTTTTACTCTTGTTAGTTAGAACAACATACTACTAAACACAGTAGGCTACTGTTGTA

Function

symbol description
ar Enables androgen binding activity; nuclear receptor activity; and steroid hormone receptor activity. Acts upstream of or within gamete generation; male courtship behavior; and male gonad development. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; heart; male organism; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; conduct disorder; disorder of sexual development (multiple); reproductive organ cancer (multiple); and spinal muscular atrophy (multiple). Orthologous to human AR (androgen receptor).

NR:

description
androgen receptor

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08557 AR, NR3C4; androgen receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_06677303_06686187.mRNA True 1598 mRNA 0.47 6 6677303 6686864

Neighbor

gene id symbol gene type direction distance location
CI01000039_06584621_06616401 AR coding upstream 60902 6584621 ~ 6616401 (+)
CI01000039_06517676_06525898 NA coding upstream 151356 6517526 ~ 6525947 (+)
CI01000039_06472455_06491979 ERLIN2.S, ERLN2, ERLIN2 coding upstream 184841 6472455 ~ 6492462 (+)
CI01000039_06436994_06439467 PTGER4B coding upstream 237699 6436994 ~ 6439604 (+)
CI01000039_06313617_06317466 ATP1B2B coding upstream 358558 6313433 ~ 6318745 (+)
CI01000039_06729386_06739661 YIPF6 coding downstream 42522 6729386 ~ 6740315 (+)
CI01000039_06744598_06746185 NA coding downstream 57734 6744598 ~ 6746534 (+)
CI01000039_06808952_06821780 STARD8 coding downstream 122088 6808952 ~ 6821971 (+)
CI01000039_06870209_06877994 CLG07HXORF56, CSGR13HXORF56, CSSA13HXORF56, C6HXORF56, CXORF56, RGD1564541, CXHXORF56, CUNHXORF56, C330007P06RIK, C4AHXORF56, C28HXORF56, CLG7HXORF56, CXORF56.L, CLG6HXORF56 coding downstream 182486 6869350 ~ 6878040 (+)
CI01000039_07064587_07070336 FAM155B coding downstream 375013 7061877 ~ 7070705 (+)
G181802 NA non-coding upstream 7654 6669314 ~ 6669649 (+)
G181788 NA non-coding upstream 141516 6535446 ~ 6535787 (+)
G181787 NA non-coding upstream 141864 6535065 ~ 6535439 (+)
G181786 NA non-coding upstream 142381 6534680 ~ 6534922 (+)
G181782 NA non-coding upstream 145173 6531858 ~ 6532130 (+)
G181855 NA non-coding downstream 228141 6915005 ~ 6915340 (+)
G181888 NA non-coding downstream 258638 6945502 ~ 6946386 (+)
G181897 NA non-coding downstream 280633 6967497 ~ 6967792 (+)
G181870 NA non-coding downstream 385335 7072199 ~ 7073021 (+)
G181991 NA non-coding downstream 651907 7338771 ~ 7339059 (+)
CI01000039_04829464_04847182 ZFR other upstream 1828740 4829413 ~ 4848563 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other upstream 2452646 4223868 ~ 4224657 (+)
G180156 NA other upstream 2585695 4090998 ~ 4091608 (+)
G180149 NA other upstream 2597740 4079419 ~ 4079563 (+)
CI01000039_04048342_04049635 NA other upstream 2627331 4048079 ~ 4049972 (+)
CI01000039_07324920_07329407 NA other downstream 633820 7324596 ~ 7329472 (+)
CI01000039_07898330_07904918 DPF2 other downstream 1209012 7896773 ~ 7905162 (+)

Expression


Co-expression Network