CI01000039_07460749_07461491 (TPPP3, TPPP2)


Basic Information

Item Value
gene id CI01000039_07460749_07461491
gene name TPPP3, TPPP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7460597 ~ 7462025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_07460749_07461491.mRNA
CTATATAAAGATAAAACTGGACCAATCAAAAGCCAGGACTAGAAAGATCCATATAATGTTGCAATAAAACATCATAATTTTACATTAAAAAAAAAAAAAAAAAAAAAACCTCAAAACATCTTTCTGTCTCTTTCTCTGCTAGATCTGACAGCATGGCTGAGGGTTCAGGTGAGGTGTCCCTGGCAGAGCTGGAGACAGCGTTTCGTAAATTTGCAGTTTATGGTGACACCAAAGCAACAGGGAATGAGATGAATGGGAAAAACTTTGTTAAGCTGTGTAAGGACTGCAAGGTCATTGATGGGAAAAGTGTCACCAGCACGGATGTGGACATCGTCTTCAGCAAAGTCAAGGTTAAATCAGCACGTGTCATCACGTTTGAGCAGTTCACTCAAGCCATGGCTGAGTTGGCTACAAAACGTTTTAAAGGGAAGAGCCAGGAGGAGGCAGTACAGCTTCTCTACGGTCTCATTGCCGGCAAAGAACCTGCCAACTTTGGTGTCACTAAAGTGGCAAAAGCCTCTGCCGTGGACAGGCTAACAGACAGCAGTAAGTTCACCGGTTCTCATAAGGAGCGTTTTGATGCGTCTGGAAAAGGAAAAGGCCGTGTTGGGAGGGAAGACATCCCTGACACCAGTGGATATGTTTCGACATACAAAGGCCAAGGCACCTATGACAGCAAAGTAAAAGAGGACAAATGAGAGCGGAAAGGATGAAAAGATGCTTTGTGCATGACATAATGTGTATGTCTGAAGTCTTCCTGGTTTTATTTCAGCAGCTGGGTCATGGCTTGCCTGCAAAAACAAACCCCTGACTAAAACTTTGCACGGATACCCGTGTATTTATCACTTTTATATCAGCAAATACTTCAAAATTAATAGCGTGCTGCCGTTATAAATCATAAATACCCTTTGGTGATGCTTGTGTTTGTTTTGAAACTGGTTCTTCTTACCACCATGTAGCAACCTGTCTGTCCATACCTGATAGCTACCCAAAAAACATTCATTTGAATCCCACAAATCCCACAAAGCTTTAAACAAAAGCGTTTGCTAAATGTGTAAATTAGTGAAACACTCAACACACAAAGCAACACTCCTTTTTAAAATAAGAAACAGATTGGAGTTGACAGATGAGAAGTCATACAACAATCTGTCATCATCTTACTGATTTTTTCATGTGATAAAAAGCAGTCTCTGACTTTCATAAATTAACATCATTTACATTTTTATGACTAA

Function

symbol description
tppp3 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule bundle formation; microtubule polymerization; and positive regulation of protein polymerization. Predicted to colocalize with microtubule. Is expressed in Kupffer's vesicle; central nervous system; forerunner cell group; neural tube; and pronephric duct. Orthologous to human TPPP3 (tubulin polymerization promoting protein family member 3).
tppp2 Predicted to enable tubulin binding activity. Acts upstream of or within axon extension. Predicted to be located in cytoplasm and cytoskeleton. Predicted to colocalize with microtubule. Is expressed in Rohon-Beard neurons; gut; and trigeminal sensory neurons. Orthologous to human TPPP2 (tubulin polymerization promoting protein family member 2).

GO:

id name namespace
GO:0048675 axon extension biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_07460749_07461491.mRNA True 1232 mRNA 0.40 3 7460597 7462025

Neighbor

gene id symbol gene type direction distance location
CI01000039_07442137_07446489 NA coding upstream 13437 7441592 ~ 7447160 (+)
CI01000039_07425682_07427826 GJD1A coding upstream 32640 7425682 ~ 7427957 (+)
CI01000039_07412923_07415375 NA coding upstream 45072 7412721 ~ 7415525 (+)
CI01000039_07394034_07396192 CRX coding upstream 64338 7392793 ~ 7396259 (+)
CI01000039_07362633_07380267 HNRPL coding upstream 80098 7362232 ~ 7380499 (+)
CI01000039_07463037_07464915 NA coding downstream 1012 7463037 ~ 7465201 (+)
CI01000039_07469638_07472925 NA coding downstream 6898 7468923 ~ 7472996 (+)
CI01000039_07474049_07478088 TAGL, TAGLN2, TAGL2, TAGLN coding downstream 11726 7473751 ~ 7478606 (+)
CI01000039_07512584_07512877 NA coding downstream 50454 7512479 ~ 7512984 (+)
CI01000039_07604862_07616660 NA coding downstream 142837 7604862 ~ 7616660 (+)
G181962 NA non-coding upstream 58297 7400581 ~ 7402300 (+)
G182014 NA non-coding upstream 60200 7400166 ~ 7400397 (+)
G182004 NA non-coding upstream 76288 7383566 ~ 7384309 (+)
G182000 NA non-coding upstream 110392 7349972 ~ 7350205 (+)
G181999 NA non-coding upstream 113395 7346805 ~ 7347202 (+)
G182067 NA non-coding downstream 19613 7481638 ~ 7482002 (+)
G182063 NA non-coding downstream 23070 7485095 ~ 7485424 (+)
G182054 NA non-coding downstream 47567 7509592 ~ 7511146 (+)
G182051 NA non-coding downstream 53271 7515296 ~ 7515637 (+)
G182048 NA non-coding downstream 57001 7519026 ~ 7526562 (+)
CI01000039_07324920_07329407 NA other upstream 135900 7324596 ~ 7329472 (+)
CI01000039_04829464_04847182 ZFR other upstream 2612034 4829413 ~ 4848563 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other upstream 3235940 4223868 ~ 4224657 (+)
G180156 NA other upstream 3368989 4090998 ~ 4091608 (+)
G180149 NA other upstream 3381034 4079419 ~ 4079563 (+)
CI01000039_07898330_07904918 DPF2 other downstream 433851 7896773 ~ 7905162 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030274 tppp2 coding NC_007116.7 CM002889.2 37056818 ~ 37065741 (+)