CI01000039_07523213_07573865 (LRCH2)


Basic Information

Item Value
gene id CI01000039_07523213_07573865
gene name LRCH2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7523197 ~ 7576151 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_07523213_07573865.mRNA
AGCCCATTATCATATTCATGAAACACATGGGGCACTGAGTTAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAAACGTGAGCCCCATCCCTCTCATGAAGACATTAAGGAAGCCTGCTGATAGCCCGTATCATCTCCATTGGCCTTAAGTCCATGCATTAAAAGCACATTGATTTCTCATTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGGGTCTGGCACCTTCTGCTAAACAGCTGTGCCTCAGTCTAAGTATTGTTTGAGTGTAAAAGGCAAATCACAAAAAGAAAGAAGAAATGAAAAAAGAACAAATAAAGTGATCATAGCTGATAGATATCAAATCATGATCTGATAGCAAATACATAGAGAGCAGCAAAAAAAGGCGAGAATCATTTCCCTTCAGTGAGCTCTCTTTCATTGGTTTTGTGCCAAAAGATGCACGTGCACACACACTCGCACACAAAACCACTGCTGGAGATGCTGAGCTGATATTAGAAACGTCGCTGTCTCAAAGAATTCCCATCAATTTATCCCTCTATCGCTTCCTCGCTCACTTCTCCTATCTCTGTCCACAGTCATTTACACACACGCACACACACGTTTGTTTCACTATATTAGTGAGGACATTACATAGACTTCCACTGAGTTTATATCAGGTTAATGATATTTTTTATGGCCTAACCCAAACCTTACCCCTAAACCTACCCATCACAGAAACATGTGCAACACTAGATTTAAATAAAAACATGTTTTGGCCTATTTATAAGCCTTTTTAACTAGTGAGGACCAGTAAAATGTCCTCACTATCAGTTGTCATAATATTTTACTATATAAGTGAGGACATTTGGCTCTTAGAGGTATAGCCAAACCTGTACACACAGTTCCTCAGTCATTCTGTCTGGCTCTTTTAAGTTTCTGTTCACTCAGTCACTGACTTTCTGTCTGTCTGTCTCTAACAATCACACAGACTTGATTCCTCATACAGTCTCTGTGTGTGTGTGCTTGTGTGTAATGTGTTTGATCAGCTCTTTTCCAGTTCAGTTGATTGGGTCTCTCTCCTCCTGTATCTCTTCAAACTATAAAGTCCTCTCATAGAAACAGACAAATGTTTCTATGAGACAGGGATAGTTCACACAAAAATGTAAATTCTGTCATTTATTCCCCCTCATGACGTTCCAAACCTGTATGACTTTCTTTCTTCTGCAGAACATGAAAGAAGATATTTTGAAGAATGTTGGTAGTTAAACAGTTTTGATTATCAACGGCTGGATAGGAAACACTGAGACAATCTTCAGAAATATTTCTTTTATGTTCCACAGAAGATTTATAATGACATGAAGGTGAGTAAATGATAACAGAATTTACATTTTTAGGTGAACTTTCTCTAAAAAGAGGAAGAAAGGTATGATAGTTTTGAAGTTCTGTTCCTGGAACAGAATTCTAATGTGACTGAAAATGAGTTTTCATTTAACATGTTTTAAAAGCCCTATCCCTTCGCTAAAAAGTCTTTTGAAAAACCCTCCAAAAATGATCACTGGTAAAACATGTATTATAATATAATGTTTAAAAGTTTGCAGGGTGGTGTGGGCGTGGTTACAGCTAACTGGCCCGTGCTAATCAGCCAAAACATGACTCCCGACTGGACTAGCAAAAGATTTTTACTTTGTCTAGCACACGATCATATCTGAAAATTTTACCACACAGTGATAAATGTATGTATAATACTGATCTTTTTAAACGTTTGAGCGTTTGAAGTGAAAAGTGCAGTGGTGTGTAAATGTTGATAATATGCGATCTCGGTGTTGAAGCACGATTGTTAAAATAACGTGAGCCTGCTCCGCTCTCTTATCAGCCAACTGAAGGTTGTTCAAGAGGAATTTCTGAGGTGGAGTCAGCACAGTTTGGGTTGGTAACGGTTGCCAAGCAACACTGCTTCGGTCTGTAATAGTTGCCAGGCAGCACCGCTTCAGGTTGGCAACGACCGCTGCACAGTCAAATATGGTTTTTGTGGGTCTTTTTTTTGTGTGTGCTTACATCTCATTGGCTGACAAGTGCCAAGCCCATAATAGTGAATTCATTCTTCTTTGCTGGCATTTGGCCTCAAACTCCTGAAGGATGTTATATGTAACGGCCCCAAAAGAATCCTGAAATGATATCATTCCTTTTCTATTTGTTTGTCTTCTTTTTTTGTCTGCTTTGATATAGTTACAGCCTTTTATATTTCTTTCACATACACTCTTTCTCTTTTCAATTATAGAGGAAGTTGACATGATTTTTGTTCTGCATGCATGTCTGCTCCCATGGCAGCACCATGACTTATCGAAAAACCGTTTTTGTGAACTCCCTCCAGAAGTTTGTATGTTTGCACCGCTGGAGTCTTTAAACCTCTACCACAACTGCATAAAGGTCATTCCAGAGGCCATTATAAACTTACAGATGCTCACCTACCTGAACATCAGTCGAAATCAGCTGTCCGTTCTCCCCAAGTTTCTCTTCACTCTTCCTCTGAAAGTGCTTGTGGTCAGCAACAATAAACTCCTGTCTATTCCTGAGGAGATCGGAAAGGCCAAAGACCTCATGGAACTGATACACAGTATATGTATTTTCTATGTTCAGGACATCAGCTGTAATGAGATCCAGGTGCTTCCTGCACAGATGGGGAAACTCCTCGCGTTACGAGAGCTCAACATACGAAGAAACTGCCTACAAGTGTTACCAGATGAGTTGTCTGATCTGCCGTTGATCAGGCTGGATTTTTCTTGTAATAAGATCACTGAGATTCCCATATCTTACCGCAAACTTAAGGAGTTACAGCACATCGCTCTCGACAACAACCCCATGCAGTCTCCTCCCGCCCAGATCTGCCTGAAGGGGAAGATCCACATCTTTAAGTATTTAAACCTGCAGGCATGTCGCCTGGATAAAAAACCAGACACACTTGACCTGCCTTCTCTGGGAAAACGCTGCTTACCTCAGCAGCTGACAGACAGTATGGAAGATTTCTATCCCAGTAAAAACCATGGCCCTGACTCAGGTATTGGCAGTGACAACGGTGACAAAAGACTGTCGACTACAGAGCCATCTGATGATGATACAATGAGTCTCCACTCTCAAGTGTCTGAGACAGCGCGGGCTGACCCACACATTCTTCTCACAAAGCTGGACTCAAACAAAGATCAGGACCCATATGACTTTATTGACCCAAATCCAGATGAAGAGGCTACTCTGTCTGAGGGAGATCTACAGCACAATGCACCCTATGTATCATGTATAAAGGAGCTGGAGCGGGTTCTAAAAACGCACCAAAGCAAAGACAAAGAGAACTGGAAAGAAGAGTCTGGCTCAGAGAAAGAGCAGTTAGCTGAAGAGGAAGAGGATGACTTAAAGGAAGTATTGGATCTGAGGAAGATCGCAGTACAGCTGCTACAACAAGAGCAACAGAACAGGGCAGAGAGTCTAATACACCGTAGAAGAGCAGCGGGGAGAGCTCACAGGTTTCTCAGCCACTCAGGGAGCAGCACCAAACAGAGATCCCCAGCTCAGACTGTCAGAAGTGCATCACTAGATGAAGGAAGCAGCTCAGCCTCTGCCTTAAGTGGACAGCCTTCTTCCTCTTGCTCGTTTGATGGAAGTTTGAAATCAGAAAGTAGTGACTCAGAACCAAGATGGCCAGAGATCCCTCCTGTGCTCAACCAGAATGAGGATCGGAGAAGAAACAAGTACCTGAGAAAAGACTACCTGAAGTACAAGTGTCAAAGTGCCCGAAGAAACTCCAGCGGCAATGACAATGATTGTGAGAAGTACAATATTACATTCACAAAGTTCATGAAGGAAGGAAACATCTGTGTAAAACATGAGGGAATGCGGTCTAATGATTTCACCACAACTCTCACTGTCTTTGGCCTGAAACCAAGATCAGCCTTCTCCCGTGGAAACCGTCAAGACTTTAGCTCCACAGACCCAAGCTTTACCATGAGGAGAAAGATGGAGCACCTCAGGGAGGAGATGGAGCAGATCAGACTCCTGCGGCAGAACCTCGAGTCTAGGTTGAAGGTTTTGTTGCCAGATGATGTGGGTGCTGCCCTGATGGATGGTGTTGTTTTATGCCATCTGGCCAATCATATTCGCCCTCGTTCTGTGGCCAGCATTCATGTACCCTCCCCTGCTGTGCCAAAGCTGAGTATGGCTAAGTGTCGGCGGAATGTTGAGAATTTCTTGGATGCTTGTAAAAAGCTTGGAGTGCCACAGGACAAGTTGTGTTTGCCACATCACATCCTGGAGGAGCGAGGTCTGGTGAAAGTTGGTGTCACTGTACAGGCTCTGCTGGATCTTCCATCATCAAAGCCCAACCAACTTTCTACCATCCCAACAATGGGCGAGGACAGGGAAAAAGTATGCAGCTTTCTGGCTGATTCTGGACCAGAGGGAAGGTGTCACTCCAGCCCTCTCCTGTATGAAGTCACTAATAGCTGTCAGTCATCTCGTTACGTTCTGTCGGTTTCCTGTCTGTCTGAGGAAATAAATGGGTCAGAAACATGTATTGATGTGCATGTAATCATAACCAGACCAGCAATGAGGACACCTGCAAAGGACCAACAAAGATGTTGCCATAAAAAAATGATCATGGCTGTCATAGCTGTTGATACTACAGTCAGTTCTCGTGAACAGTATGAGTCAGGAATTTACAACAGAATTCCTGAACGTTCTGCACGCGGCAGTGTAATTGCGTTGTGCGCTCATTGTTTGTTGTGCAGGTATGAATACTTTCAGCAATAAAAATAGGCCAATTAAA

Function

symbol description
lrch2 Orthologous to human LRCH2 (leucine rich repeats and calponin homology domain containing 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_07523213_07573865.mRNA True 4810 mRNA 0.43 24 7523197 7576151

Neighbor

gene id symbol gene type direction distance location
CI01000039_07498583_07505779 NA coding downstream 16595 7498503 ~ 7506602 (-)
CI01000039_07450597_07454594 NA coding downstream 68567 7449808 ~ 7454630 (-)
CI01000039_07401817_07402410 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding downstream 120558 7400571 ~ 7402639 (-)
CI01000039_07385848_07389331 KPTN coding downstream 132707 7384829 ~ 7390490 (-)
CI01000039_07320926_07323244 CKM, CKM.S, CKMA, CKM2 coding downstream 198544 7320717 ~ 7324653 (-)
CI01000039_07592640_07593317 NA coding upstream 16397 7592548 ~ 7595053 (-)
CI01000039_07619613_07632295 WDR44 coding upstream 42729 7618880 ~ 7632295 (-)
CI01000039_07658015_07658757 NA coding upstream 81389 7657540 ~ 7659052 (-)
CI01000039_07781930_07783389 NA coding upstream 205739 7781890 ~ 7783694 (-)
CI01000039_07908291_07909766 NA coding upstream 331753 7907904 ~ 7910468 (-)
G183151 NA non-coding downstream 26871 7496060 ~ 7496326 (-)
G183150 NA non-coding downstream 27186 7495765 ~ 7496011 (-)
G183143 NA non-coding downstream 37712 7485119 ~ 7485485 (-)
G183142 NA non-coding downstream 38389 7484577 ~ 7484808 (-)
G183140 NA non-coding downstream 41204 7481633 ~ 7481993 (-)
G183154 NA non-coding upstream 18973 7595124 ~ 7595358 (-)
G183212 NA non-coding upstream 158392 7734543 ~ 7734910 (-)
G183214 NA non-coding upstream 194278 7770429 ~ 7775182 (-)
G183231 NA non-coding upstream 200577 7776728 ~ 7777392 (-)
G183232 NA non-coding upstream 202180 7778331 ~ 7778642 (-)
CI01000039_07134422_07137732 NA other downstream 385430 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 874621 6646544 ~ 6653449 (-)
G182827 NA other downstream 887997 6634547 ~ 6635200 (-)
G182771 NA other downstream 1014764 6507955 ~ 6508433 (-)
G182470 NA other downstream 1886433 5636058 ~ 5636764 (-)
G183261 NA other upstream 395965 7972116 ~ 7975045 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location