G179867


Basic Information

Item Value
gene id G179867
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3251878 ~ 3252353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204222
TCAAGATGCCAAGTGAGCTGTTGGTTTTTTCCAGCTTTGGTTTCATTCCCTTCGGTCTCACCACCTCGAGGAGTCATTGTCAGGTGGCTCAGGGAATGTGTTTGCTCCCATCTTGCTTTTAGAGTGTTTACACTGTGGAAATGAGATGCATTTTCACCTGGTGCACATCAACGTCACGCAAGCTTAGAATAGCAGCAGTGAGATGAAAGTGGTCTCAAAAGGCCTCCATCCGCATGCGTGAAGGGAAAACTCAACCAAGGGTTTCAACTCAGATGGGATTCAACAACCAAATACAAGAAAATCCCAGGTACTTTTTGTTGGTTAATATAATATAAAAAGTTACTATAAGGGTCAATCACATAATCTCGTAAAAAAACCTGATCAGGTTTAAAGCACATTAGCTTCTTATTATTAATTTATTCTTTGTAATCATGTTGGTTTCTTATGGTTTTTCAATAATACATAATCAAATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204222 True 476 lncRNA 0.38 1 3251878 3252353

Neighbor

gene id symbol gene type direction distance location
CI01000039_03181221_03188468 FBP2 coding upstream 62643 3180393 ~ 3189235 (+)
CI01000039_03170952_03179241 FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A coding upstream 72605 3169850 ~ 3179273 (+)
CI01000039_02934780_02935076 NA coding upstream 316648 2934635 ~ 2935230 (+)
CI01000039_02740498_02764324 NPFFR2A, NPFFR2 coding upstream 487050 2740242 ~ 2764828 (+)
CI01000039_02724018_02725548 NA coding upstream 526214 2724018 ~ 2725664 (+)
CI01000039_03352914_03354134 GAS1A coding downstream 99177 3351530 ~ 3354476 (+)
CI01000039_03359162_03369982 NA coding downstream 106542 3358895 ~ 3370403 (+)
CI01000039_03454189_03458136 NA coding downstream 201687 3454040 ~ 3458140 (+)
CI01000039_03596770_03597721 NA coding downstream 343644 3595997 ~ 3597726 (+)
CI01000039_03651436_03658228 NA coding downstream 399083 3651436 ~ 3658264 (+)
G179866 NA non-coding upstream 532 3250610 ~ 3251346 (+)
G179865 NA non-coding upstream 2103 3249096 ~ 3249775 (+)
G179864 NA non-coding upstream 2790 3248830 ~ 3249088 (+)
G179863 NA non-coding upstream 3261 3248136 ~ 3248617 (+)
G179862 NA non-coding upstream 3821 3247766 ~ 3248057 (+)
G179868 NA non-coding downstream 877 3253230 ~ 3253457 (+)
G179869 NA non-coding downstream 2055 3254408 ~ 3254629 (+)
G179870 NA non-coding downstream 3908 3256261 ~ 3256660 (+)
G179871 NA non-coding downstream 4567 3256920 ~ 3257401 (+)
G179872 NA non-coding downstream 7315 3259668 ~ 3260443 (+)
G179798 NA other upstream 119694 3129572 ~ 3132184 (+)
G179528 NA other upstream 753259 2497674 ~ 2498619 (+)
G178423 NA other upstream 2266126 966676 ~ 982406 (+)
G179903 NA other downstream 171684 3424037 ~ 3425555 (+)
CI01000039_04048342_04049635 NA other downstream 795940 4048079 ~ 4049972 (+)
G180149 NA other downstream 822523 4079419 ~ 4079563 (+)
G180156 NA other downstream 838645 4090998 ~ 4091608 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 971226 4223868 ~ 4224657 (+)

Expression


Co-expression Network