G179872


Basic Information

Item Value
gene id G179872
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 3259668 ~ 3260443 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU204227
GATCACTCTAGCACATGGTGAGAGAATATAAGAAAGGCATGATGAATGGTTTCAAAATGTAAATAGCACCATGCCATGCTCATTATGAAATAAAAACTGTTAAATTATTTAAATAATAGGACATTGTGGTGAATACAAAGCATTCATGTCTCAAACAAAGTATAAAAGAAATACAATTCAAATGTTATTAAGCAGAATATTATAATCTCACAGTCCAGTCAAGTCAGCTGTCGAAGGAGTGGCACAAAAAGTAACCAGGTTTCTATGTACAGTACACACATATTTAATCGTGTATAAACACACACAGGCCACCAGCTGCATGATGCATTAAATCTCCCTACACCAAAGCTCATAGCATTCTCCAGTTGACCAGGGTTTCTGTTAATCACAGGAAACGAGAACAGAACTGACACATTCAAGGAGCTCTACTTGGAGAAAGCTATCTGTCAGCATTATCATTCACTTCAGTGGTAGTTCCTCAGCTAACACAGGAACCAAATTTGAATTCTGACATCTTTACTCATGGGTGTCAGCTCTGGACAATGTTTTAGAGCCAATCACCTGAGCTGTAAATGTCATGGGACTATTTACTCTGAAGCCACAGGAAAATGATGGCTGACAACACTGACTGATTGGCTGATAGTACTGCAAAAAGAGCACAGTCTCAAATGCTTTACTACTGACTATCCTGTGCTGTGAAATTATGCATAAATGATCTGTCATATGTAAAACATCTAGGCCTGGTTTCACAGACAGGGCTTAGATTAAGCCAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU204227 True 776 lncRNA 0.39 1 3259668 3260443

Neighbor

gene id symbol gene type direction distance location
CI01000039_03181221_03188468 FBP2 coding upstream 70433 3180393 ~ 3189235 (+)
CI01000039_03170952_03179241 FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A coding upstream 80395 3169850 ~ 3179273 (+)
CI01000039_02934780_02935076 NA coding upstream 324438 2934635 ~ 2935230 (+)
CI01000039_02740498_02764324 NPFFR2A, NPFFR2 coding upstream 494840 2740242 ~ 2764828 (+)
CI01000039_02724018_02725548 NA coding upstream 534004 2724018 ~ 2725664 (+)
CI01000039_03352914_03354134 GAS1A coding downstream 91087 3351530 ~ 3354476 (+)
CI01000039_03359162_03369982 NA coding downstream 98452 3358895 ~ 3370403 (+)
CI01000039_03454189_03458136 NA coding downstream 193597 3454040 ~ 3458140 (+)
CI01000039_03596770_03597721 NA coding downstream 335554 3595997 ~ 3597726 (+)
CI01000039_03651436_03658228 NA coding downstream 390993 3651436 ~ 3658264 (+)
G179871 NA non-coding upstream 2267 3256920 ~ 3257401 (+)
G179870 NA non-coding upstream 3008 3256261 ~ 3256660 (+)
G179869 NA non-coding upstream 5039 3254408 ~ 3254629 (+)
G179868 NA non-coding upstream 6211 3253230 ~ 3253457 (+)
G179867 NA non-coding upstream 7315 3251878 ~ 3252353 (+)
G179873 NA non-coding downstream 163 3260606 ~ 3260814 (+)
G179874 NA non-coding downstream 1530 3261973 ~ 3262314 (+)
G179875 NA non-coding downstream 2427 3262870 ~ 3264103 (+)
G179876 NA non-coding downstream 6086 3266529 ~ 3267121 (+)
G179802 NA non-coding downstream 7369 3267812 ~ 3268228 (+)
G179798 NA other upstream 127484 3129572 ~ 3132184 (+)
G179528 NA other upstream 761049 2497674 ~ 2498619 (+)
G178423 NA other upstream 2273916 966676 ~ 982406 (+)
G179903 NA other downstream 163594 3424037 ~ 3425555 (+)
CI01000039_04048342_04049635 NA other downstream 787850 4048079 ~ 4049972 (+)
G180149 NA other downstream 814433 4079419 ~ 4079563 (+)
G180156 NA other downstream 830555 4090998 ~ 4091608 (+)
CI01000039_04223888_04224220 EMC6.S, EMC6, EMC6.L other downstream 963136 4223868 ~ 4224657 (+)

Expression


Co-expression Network