Gene
RNA
| Item | Value |
|---|---|
| gene id | G179901 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000039 |
| NCBI id | null |
| chromosome length | 8355537 |
| location | 3411007 ~ 3411431 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU204261 | False | 425 | lncRNA | 0.36 | 1 | 3411007 | 3411431 |
| TU204260 | True | 371 | lncRNA | 0.37 | 1 | 3411061 | 3411431 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000039_03359162_03369982 | NA | coding | upstream | 40604 | 3358895 ~ 3370403 (+) |
| CI01000039_03352914_03354134 | GAS1A | coding | upstream | 56531 | 3351530 ~ 3354476 (+) |
| CI01000039_03181221_03188468 | FBP2 | coding | upstream | 221772 | 3180393 ~ 3189235 (+) |
| CI01000039_03170952_03179241 | FBP1.S, F16P1, FBP1B, FBP1, FBP2, FBP1A | coding | upstream | 231734 | 3169850 ~ 3179273 (+) |
| CI01000039_02934780_02935076 | NA | coding | upstream | 475777 | 2934635 ~ 2935230 (+) |
| CI01000039_03454189_03458136 | NA | coding | downstream | 42609 | 3454040 ~ 3458140 (+) |
| CI01000039_03596770_03597721 | NA | coding | downstream | 184566 | 3595997 ~ 3597726 (+) |
| CI01000039_03651436_03658228 | NA | coding | downstream | 240005 | 3651436 ~ 3658264 (+) |
| CI01000039_03659569_03662364 | NA | coding | downstream | 248138 | 3659569 ~ 3662652 (+) |
| CI01000039_03665710_03683733 | NA | coding | downstream | 253816 | 3665247 ~ 3683850 (+) |
| G179900 | NA | non-coding | upstream | 609 | 3409291 ~ 3410398 (+) |
| G179933 | NA | non-coding | upstream | 8551 | 3402034 ~ 3402456 (+) |
| G179909 | NA | non-coding | upstream | 38967 | 3371826 ~ 3372040 (+) |
| G179893 | NA | non-coding | upstream | 87400 | 3323338 ~ 3323607 (+) |
| G179883 | NA | non-coding | upstream | 129570 | 3280776 ~ 3281437 (+) |
| G179899 | NA | non-coding | downstream | 361 | 3411792 ~ 3414176 (+) |
| G179951 | NA | non-coding | downstream | 49159 | 3460590 ~ 3461396 (+) |
| G179959 | NA | non-coding | downstream | 76617 | 3488048 ~ 3488365 (+) |
| G179961 | NA | non-coding | downstream | 97976 | 3509407 ~ 3541121 (+) |
| G179963 | NA | non-coding | downstream | 105757 | 3517188 ~ 3518417 (+) |
| G179798 | NA | other | upstream | 278823 | 3129572 ~ 3132184 (+) |
| G179528 | NA | other | upstream | 912388 | 2497674 ~ 2498619 (+) |
| G178423 | NA | other | upstream | 2425255 | 966676 ~ 982406 (+) |
| G179903 | NA | other | downstream | 12606 | 3424037 ~ 3425555 (+) |
| CI01000039_04048342_04049635 | NA | other | downstream | 636862 | 4048079 ~ 4049972 (+) |
| G180149 | NA | other | downstream | 663445 | 4079419 ~ 4079563 (+) |
| G180156 | NA | other | downstream | 679567 | 4090998 ~ 4091608 (+) |
| CI01000039_04223888_04224220 | EMC6.S, EMC6, EMC6.L | other | downstream | 812148 | 4223868 ~ 4224657 (+) |
